Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02589 ATGGCGACAGCACCGGGAAACCAAATGCTGGAGGGAGGAGGAGCGCCGCCGCCTCCGGGGACTGATATGACAGGAATATGTTTCCGAGACCAGCTCTGGCTCAACAGCTTCCCTCTCGATCGCAACCTTGTCTTCGATTACTTTGCCCTTTCCCCTTTCTATGATTGGACTTGCAACAACGAGCAACTCCGTATGCGCTCCGTTCACCCCCTCGACCTCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTTATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACGCCTATGCTCGCCTACTACGTCCTCGATGGTTCCATATACCAGGCTCCGCAACTCTGCAATGTTTTTGCTGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCATTTACTACAGCTGCCTCCAAGTTGGAGAAGATTGGATATGCTGGGTCAGTGGATTCTGAAAATGAGACTGCATTGGTGGAGTCAAAGACTGCTAAGGAGACGATTGACATAAAGGAAGTTAAGCGTGTGGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCACCTCCACCACCATTTCCAGAAGGGTATGTACCTCCTCCTACAGGTGAAGCTGAGAAAGGCACCGAAACTCAGGAAGCAGCAGAAACACAAGCTCCTACTGCTGATCCCATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTAA 756 0.4934 MATAPGNQMLEGGGAPPPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSVDSENETALVESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTGEAEKGTETQEAAETQAPTADPIIDQGPAKRMKF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02589 251 MobiDBLite consensus disorder prediction 1 21 - -
Viun10g02589 251 MobiDBLite consensus disorder prediction 197 251 - -
Viun10g02589 251 MobiDBLite consensus disorder prediction 198 214 - -
Viun10g02589 251 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Viun10g02589 251 PIRSF MED6_meta/plant 13 251 IPR016820 GO:0003712|GO:0006357|GO:0016592
Viun10g02589 251 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Viun10g02589 251 PANTHER MED-6-RELATED 3 251 IPR007018 GO:0003712|GO:0006357|GO:0016592
Viun10g02589 251 FunFam Mediator of RNA polymerase II transcription subunit 6 20 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02589 Viun-Chr10 39588022 39592768 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Viun10g02589 Med6 9.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02589 K15128 - gmx:100792248 452.21