Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02583 TATAAAAGCTGGGTTTGGTCCTCTGTTTCATCTCTAACATTGAAGACTCTTGAACAATTATCAAGGATTCTAATCTTGTTCTGGCAGCAGTTGTTCTACCAGTGTGAACTAGTAATTAACAAGGATCAGTTTCTCCTCCAAGTTATCAAAAAATTACTATCATCTATGGATGGTTTGAGCTGGGATACATCTCAATTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCAGCAGACTTTGAAGGAGGTTACTCCATGCCCAATGTTCTAAATCAAATACAGGATTTGCAGAAAGCTGAAACGGGTCATGCAGATTCAAATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCACTTCTTCAGAGATAATGGATGTGATGCAAATGCAAAGGCAAAACACAAATCTTTTACAGCACGCACCAAGAATGATGATGCCAGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATATCCGTCTCTGTCAGTCAATGGACCTCAAAGTATGAACCTGATTAGCAACTACATGCCGGATTTCAACATGGCCCACCAACAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGTTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGCAACACAGACACATCTGTTGAAGATGATGATGGCATCTCAATGATTTTATCTGACTGTAGAAAAAACTTGTGGAACTTCAGCTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGTAGAAAGGAGGACTTGAAGTGTCCGGTGAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATAGAGGGAAAAAAGTACAATCAAAGGCTGATTGTTCAAAGAGGAGCCATGAGGAAACTGAAATGATCAAAGTTGGTGGCACTGGCAGTGGTTCCTGCTTCAGTATTGTGCAGAATTGTTCTTCTGTTGAGGAAGGTGGATTCAGACTCATTGATAATCCATCAAAAAGCAAGAAACCCAGATGGGAGAAGAGTTCCTCTTCAAATAACATCAATTTCCAGCAACCAAATTCATCCATGTGTTCATCCATTGAGGAACCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCCTTTAGGCCTGTGAACTTTGGCTTGGATGCTGCTGAAAAGCCAAAGAGGAAGAATGTGAGAATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGTGGAAGCAAAATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGATCACAGGTTAAGGCACTGGAATGTCTAGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACAATCCATCATTCCCAGGGTTGA 1515 0.4211 YKSWVWSSVSSLTLKTLEQLSRILILFWQQLFYQCELVINKDQFLLQVIKKLLSSMDGLSWDTSQFEANTPILWSTIQPPADFEGGYSMPNVLNQIQDLQKAETGHADSNSERVIYQSADATTTSSEIMDVMQMQRQNTNLLQHAPRMMMPVKSGTGASWGEAFTSQSYPSLSVNGPQSMNLISNYMPDFNMAHQQQLVNGSQNGKGACSLESFDCLISATNSNTDTSVEDDDGISMILSDCRKNLWNFSYGSAASTGESESNASNGRKEDLKCPVNEVDETVSQSSLDRGKKVQSKADCSKRSHEETEMIKVGGTGSGSCFSIVQNCSSVEEGGFRLIDNPSKSKKPRWEKSSSSNNINFQQPNSSMCSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVDAMNCPPTSIAFSFNPSFPMQTIHHSQG 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02583 504 Gene3D - 418 472 IPR036638 GO:0046983
Viun10g02583 504 MobiDBLite consensus disorder prediction 292 308 - -
Viun10g02583 504 SMART finulus 419 468 IPR011598 GO:0046983
Viun10g02583 504 Pfam Helix-loop-helix DNA-binding domain 423 462 IPR011598 GO:0046983
Viun10g02583 504 MobiDBLite consensus disorder prediction 339 371 - -
Viun10g02583 504 MobiDBLite consensus disorder prediction 256 275 - -
Viun10g02583 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 418 472 IPR036638 GO:0046983
Viun10g02583 504 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 193 496 IPR045843 GO:0003700|GO:0006355
Viun10g02583 504 MobiDBLite consensus disorder prediction 281 308 - -
Viun10g02583 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 413 462 IPR011598 GO:0046983
Viun10g02583 504 MobiDBLite consensus disorder prediction 352 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02583 Viun-Chr10 39546213 39548026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02583 155 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.525 1.35e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02583 HLH 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02583 - - vra:106773034 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02583 10 39546213 39548026 Viun10g02583 10 39546213 39548026 ECH
Viun5g03817 5 46733312 46735923 Viun10g02583 10 39546213 39548026 PCT