Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02572 ATGGCGACAGTTCCAGGGCAACTCGTGTGGGAGATCGTGAAGAAGAACAACTCCTTTCTAGTGAAACAGTTTGGAAGAGGCACCCAGAGCATCGAATTCAGCAGAGAGTCCAACAATCTCTACAACCTCAATTCATTCAAATTCTCTGGTTTGTCAAACAAGAAAACTGTTACCATTCAGCCTGTTGGTAAGGATCTGTCTGTTTTGTTGGCTACAACAAAGACAAAGAAGCAGAACAAACCTGCTTCGTTGCTCCACAAATCTGTTATGAAGAAGGAGTTCCGTAGGATGGCAAAGGCTGTTGAAAATCAGGTTGCGGATAATTACTACAGGCCTGATCTTAAGAATGCCGCCCTTGCAAGGTTGAGTGCTGTTAACAGAAGTCTCAAAGTTGCCAAGTCCGGTGTCAAGAAGAGGAACAGACAGGCCGTGAAGGTCTCTGGTAGGAAGTGA 453 0.4525 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSIEFSRESNNLYNLNSFKFSGLSNKKTVTIQPVGKDLSVLLATTKTKKQNKPASLLHKSVMKKEFRRMAKAVENQVADNYYRPDLKNAALARLSAVNRSLKVAKSGVKKRNRQAVKVSGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02572 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Viun10g02572 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Viun10g02572 150 FunFam 60S ribosomal protein L28 5 133 - -
Viun10g02572 150 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02572 Viun-Chr10 39500161 39502655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02572 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 7.58e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02572 K02903 - gmx:100499921 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02572 10 39500161 39502655 Viun5g03813 5 46704897 46707127 ECH
Viun10g02572 10 39500161 39502655 Viun10g02572 10 39500161 39502655 ECH
Viun5g03813 5 46704897 46707127 Viun10g02572 10 39500161 39502655 PCT