Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02560 ATGACGATGAAGAAGAAGAAGACGAAGCTTTGTTGCAGATACTGTAACAAGAAGTTCTCCAGTTACCAAGCTTTGGGTGGACATCAGAATGCACACAAAGCAGAAAGAGCAGCAACACAGAGAGAAAAGATTCTGAACATGGCTTCTGCATATGACAGAAGTTCTTATGTTGGTGGTTTTGTTGATTCAAATTATGGATTGAGAGAAAAATCATGTGGGGTGTCACCAATTTCCATGACTCGTTTCAAGCCACATTTTGAAGTCAAACATGATCATCATCAATGGTCAGGGCAATACACTTTGGATTATGTTCAAGCCACCATTCAAAGGTTGCAGACTTTGAATGGTGAAGGGAGTGGATTTCATCAGCATCACAACTCATATCAACCTTTGATTTTTTCTGTTCTTGGAGGTGAAAAACCAAATTCAGGGTCGTTGTATGATACTGGTTTATCTTATAAGGGAAAAGATTCTGCAATGATATCTCAGAATGAAATCACACAGAATATTACAAAGAATTCTGGTGAAGAAAATGGTTTTTCTCCAATGGCTGCTGCTACTTCCAATGGAGTGGTGGAGGAACTTGATTTGACTCTCAGGATTTGA 606 0.3894 MTMKKKKTKLCCRYCNKKFSSYQALGGHQNAHKAERAATQREKILNMASAYDRSSYVGGFVDSNYGLREKSCGVSPISMTRFKPHFEVKHDHHQWSGQYTLDYVQATIQRLQTLNGEGSGFHQHHNSYQPLIFSVLGGEKPNSGSLYDTGLSYKGKDSAMISQNEITQNITKNSGEENGFSPMAAATSNGVVEELDLTLRI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02560 201 SUPERFAMILY beta-beta-alpha zinc fingers 9 37 IPR036236 -
Viun10g02560 201 Pfam C2H2-type zinc finger 11 34 - -
Viun10g02560 201 Gene3D Classic Zinc Finger 2 57 - -
Viun10g02560 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Viun10g02560 201 ProSitePatterns Zinc finger C2H2 type domain signature. 11 32 IPR013087 -
Viun10g02560 201 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 200 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02560 Viun-Chr10 39437071 39437676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02560 12 72 C2H2 Transcription Factor Family AT5G14010 44.444 8.17e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02560 - - vun:114165662 409.068