Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02551 ATGGCTCTCACAACCACAATAGAGAACTTCTCCTGCAATTGCCATGGAAGTTTCAGTTTGGCTTCCTTTTCCAGCCAAAGGTGCATAATAGACATTGTCAACATGTTTTTCCTGTGTGTCTTTTATGCATCATTGTTCTCCAATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTGGTTACAGAAAGGGACTGGTTCGAGTAGTTACTTCATTCTGTTGTACTCTTTTAAGCATTGCATATTTTGTTGATGGTGTGTGGAATCTCATAACCAAAACCACAGGCTTCAATCAGCTGAACTTGTTGGTTTGCATTGTGAGAGGACTGGTTTGGATATCTTTAGCAGCTTCACTGTTTGTTCAAAGATTTCAATGGATAAAAACACTGTGCTCTATTTGGTGGGTGTTTTCATGCACACTGGTTTCAGTACTCAATGCTGAAATTCTGCTGAAAGAGCGAAGCTTTCAAGTATTTGATATGGCAACATGGCCAGTGCACATCCTAACTGTTCTCTGTGCCTTCCAAAATCATGGCTACTTTGTCCCACAAGAAATCCCAGATCCCAGTTCATGTGAGCCTCTGTTAGTTCATAAGGAAATGCATAAACAAACAGGACTTGGCCATGCCTCTTTTCTCAGCAGATTCACATTCTCTTGGATGAATGGTTTACTCAGTTTGGGTTACTCAAAGCCACTAGCATGTGAAGACATCCCTTCTCTTGCTTCTGAAGATAAATCTGATTTTGCATACCAAAAGTTTGCACATGCATGGCTTTCCCTTTTGAGAAACAGTAACAATTCCATAAACTTGGTCATGTGGTCCATAGCTCGAGTTTACATGAAGGAAAATATCTACATAGCCATTTGCGCATTTCTGAGAACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTTATGCTTTTGTAAACTACTCCAGTTGCACTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTGTCTTGTGTTTGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAACTCACGGAGGTTAGGAATGAAAATGAGATCTTCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAGCTCTCAGCTTTGGGTAGGAGAAGACATTCAACTGGTGAGATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGTGAATTTCCATGGTGGTTTCATACATTGTTTTTTTCTGCACTGCAAGTTTTTCTGGCTCTTGGTGTGCTTTTTGGTGTTGTGGGTCTAGGTGCACTTCCTGGTTTAGTGCCACTTCTCATTTGTGGATTTCTCAACGTACCATTTGCAAAGATCCTTCAAAAATATAGGTCTGAGTTTATGATTGCACAAGATGAGCGTCTGAGATCAACTTCAGAGATTCTTAGTAGTATGAAAATCATAAAGCTACATTCCTGGGAGGATAACTTCAAGAAGCTAGTTGAATCCCTTCGTGCTAAAGAGTTAAAATGTTTGGCTGAAGTACACTTCATGAGAGCTTGTGGAACATTTATATATTGGCTCTCTCCGACCATCATTTCTTCAGTTATCTTAATGGGGTGTGCGCTTTTTCAGAGTGCCCCTTTGGATGCTGGAACTATCTTCACAGTTCTTGCAACATTGAGAAGCATCGGAGAACCTGTCATATTGATTCCAGAAGCACTTTCTGTTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGGTAAAAGGTGATGACATTGGAAGAACATCAAAAGATTCTTGCAACAAGGGTGTTGAAATTCTAGCAGGCAGCTTCAGTTGGGATCTGCAATCATTGCCTCTAACTTTGAGAGAAGTGAATTTTGAGATCAAGTGGAAGCAGACAGTAGCAGTTTGTGGTCCAGTTGGAGCTGGAAAAACATCTCTTCTGTATGCAATACTCGGAGAGATACCCAAAATTTCAGGAACTGTTAGAGTAGGAGGAACACTTGCCTACGTTTCCCAAATTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTATTTGGAAAACCAATGGAAGAAACCAGGTATGAATATGCCATTAAGGTCTGTGCCTTGGATAAGGATATTAATGGATTTAGCCACGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCCTCTATTCTGTTTCATGATTGTGTAAGGACTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATACTGGTAATGGAAGGAGGAAAAATTAGTCAAACGGGTAGCTATGAAGATCTGTTAACTGCTGGAACAGCCTTTAAGCAGCTTCTGAGTGCTCATAGAGAGGCAATTACAGGAATAGAAACAAACAGTGAAAACAAAAGAGAAGTTCAAAATGTTGTCACAGTTCAGCCTGAGGATTCTCATCCTTCTAATCTCACTAAAAGTGGAAGTAATGGGGAAATTTCTGCAGAGATTCAACTTACACAAGAAGAAGAAAAGGAAAGTGGTGGTGTTGGGTGGCAGCCATTCTGTGACTATATTTTGTTCCCTGAGGGATCTTTGCTTCTATGTTTGAGCATATTAGCACAGTTGATTTTTGTATGTTTGCAGGCTGCATCAACTTCTTGGCTTGCCATAGCCAATGAGATGTCAAAAGTAACCAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTTCCATTTCAAGCATTGTTTTTGTATATCTGAGATCTTACTTTGCTGCACATCTTGGTTTGAAAGCTTCTAAAGCATTCTTCTCTGCCTTCACTGATTCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTTACCAGAGCTTCATCAGATTTTAGTATTTTAGATTTCGATATCCCTTTTTCCACCATCTTTGTGATAGCTGAAGTAACAGAGCTTCTTACAATGATTGTGGTAATGGTTTCAGTCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCCATGGTGGCTACAAAATATATCCAGGGCTATTATCAAGCTTCTGCAAGAGAAATTACACGAATCAATGGAACTACAAAAGCCCCTCTTATGAATTTTGCGGCTGAGACATATCTTGGTGTGGTTAGTATAAGAGCTTTCAACATGGCTGACAGATTCTTCAAAAACTACCTTAACCTTGTCGATACAGATGCCACGATGTTCTTTCATTCCAATGCTGCCATCGAGTGGTTAATTTTAAGGATTCAAGCACTTCAGAATTTGACAGTCTTCACTGCAGCTTTGCTTCTTGTTCTACTTCCGAAGGGATTTGTGGCCCCTGGCCTTGTGGGGCTTTCTCTGTCTTACGGTTTTTCACTGACAGGAACCGTAGTTTATCTTACTAGAATGTTTTGCAACTTATCGAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAACCAAGTGCAATTGTAGATGACAATAGACCACCACCTTCTTGGCCTTCTAAAGGTCGAATAGATTTTCAATCTGTAGAGATCAGATATCGTCCAAATTCTCCATTAGTCTTGAAGGGCATCTCTTGTACGTTTAAAGAAGGGAGTAGAGTTGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCATAGTTGAGCCTACTAAAGGTGACATTCTTATAGATGGGATTAATATATGCTCAATTGGGTTAAAAGATTTAAGAATAAAGCTTAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAATAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGGCAACAATTAGTAGTCTACCAAATCTCTTGGAGACTTCTGTGAGTGATGAAGGGGAAAACTGGAGTGTGGGGCAGCGCCAACTCATTTGTCTTGGAAGGGTGCTTCTGAGGAAGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCCACAGATGGTGTTCTGCAACGAATCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCCACTGTAATAGACAGTGACATGGTCATGCTCCTATCTTATGGGAAAGTGGTGGAGTATGAGAAACCTTCAAAGCTTATGGATACTAACTCTTCCTTCTCTAAGCTGGTAGCTGAATATTGGTCCCACTGCAACGATCGTCCACAAAAGATTAGCATGTATCAATCTCAGCAACGGAGGGAAGCAATATAA 4419 0.4014 MALTTTIENFSCNCHGSFSLASFSSQRCIIDIVNMFFLCVFYASLFSNLIKKRPANASGGYRKGLVRVVTSFCCTLLSIAYFVDGVWNLITKTTGFNQLNLLVCIVRGLVWISLAASLFVQRFQWIKTLCSIWWVFSCTLVSVLNAEILLKERSFQVFDMATWPVHILTVLCAFQNHGYFVPQEIPDPSSCEPLLVHKEMHKQTGLGHASFLSRFTFSWMNGLLSLGYSKPLACEDIPSLASEDKSDFAYQKFAHAWLSLLRNSNNSINLVMWSIARVYMKENIYIAICAFLRTICAVVSPLLVYAFVNYSSCTEEDLKQGMAIMGCLVFAKVVESVSQRHWSFNSRRLGMKMRSSLMAAVYQKQLKLSALGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLFFSALQVFLALGVLFGVVGLGALPGLVPLLICGFLNVPFAKILQKYRSEFMIAQDERLRSTSEILSSMKIIKLHSWEDNFKKLVESLRAKELKCLAEVHFMRACGTFIYWLSPTIISSVILMGCALFQSAPLDAGTIFTVLATLRSIGEPVILIPEALSVMIQVKVSFDRLNTFLLDDEVKGDDIGRTSKDSCNKGVEILAGSFSWDLQSLPLTLREVNFEIKWKQTVAVCGPVGAGKTSLLYAILGEIPKISGTVRVGGTLAYVSQIPWIQSGTIRDNILFGKPMEETRYEYAIKVCALDKDINGFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFHDCVRTALRRKTVILVTHQVEFLSEVDKILVMEGGKISQTGSYEDLLTAGTAFKQLLSAHREAITGIETNSENKREVQNVVTVQPEDSHPSNLTKSGSNGEISAEIQLTQEEEKESGGVGWQPFCDYILFPEGSLLLCLSILAQLIFVCLQAASTSWLAIANEMSKVTSSILVGVYSVISISSIVFVYLRSYFAAHLGLKASKAFFSAFTDSIFNAPMLFFDSTPVGRIFTRASSDFSILDFDIPFSTIFVIAEVTELLTMIVVMVSVTWQVLIVAVLAMVATKYIQGYYQASAREITRINGTTKAPLMNFAAETYLGVVSIRAFNMADRFFKNYLNLVDTDATMFFHSNAAIEWLILRIQALQNLTVFTAALLLVLLPKGFVAPGLVGLSLSYGFSLTGTVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVDDNRPPPSWPSKGRIDFQSVEIRYRPNSPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRIVEPTKGDILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRNNLDPLGLYSDDEIWKALEKCQLKATISSLPNLLETSVSDEGENWSVGQRQLICLGRVLLRKNRILVLDEATASIDSATDGVLQRIIRQEFSECTVITVAHRVPTVIDSDMVMLLSYGKVVEYEKPSKLMDTNSSFSKLVAEYWSHCNDRPQKISMYQSQQRREAI 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02551 1472 SUPERFAMILY ABC transporter transmembrane region 272 579 IPR036640 GO:0005524|GO:0016020
Viun10g02551 1472 FunFam ABC transporter C family member 3 1197 1448 - -
Viun10g02551 1472 SMART AAA_5 1240 1433 IPR003593 GO:0016887
Viun10g02551 1472 SMART AAA_5 626 799 IPR003593 GO:0016887
Viun10g02551 1472 Pfam ABC transporter transmembrane region 284 544 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02551 1472 Pfam ABC transporter transmembrane region 900 1154 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02551 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02551 1472 CDD ABCC_MRP_domain1 599 799 - -
Viun10g02551 1472 CDD ABC_6TM_ABCC_D2 896 1189 IPR044726 GO:0140359
Viun10g02551 1472 Gene3D ABC transporter type 1, transmembrane domain 271 577 IPR036640 GO:0005524|GO:0016020
Viun10g02551 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02551 1472 FunFam Multidrug resistance protein associated1 578 842 - -
Viun10g02551 1472 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Viun10g02551 1472 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Viun10g02551 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 822 IPR003439 GO:0005524
Viun10g02551 1472 CDD ABCC_MRP_domain2 1212 1432 - -
Viun10g02551 1472 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 208 1450 - -
Viun10g02551 1472 Pfam ABC transporter 1231 1379 IPR003439 GO:0005524
Viun10g02551 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1203 1447 IPR027417 -
Viun10g02551 1472 FunFam ABC transporter C family member 10 267 581 - -
Viun10g02551 1472 Gene3D - 578 847 IPR027417 -
Viun10g02551 1472 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Viun10g02551 1472 FunFam ABC transporter C family member 5 864 1195 - -
Viun10g02551 1472 Gene3D ABC transporter type 1, transmembrane domain 866 1195 IPR036640 GO:0005524|GO:0016020
Viun10g02551 1472 Gene3D - 1197 1448 IPR027417 -
Viun10g02551 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1448 IPR003439 GO:0005524
Viun10g02551 1472 SUPERFAMILY ABC transporter transmembrane region 896 1194 IPR036640 GO:0005524|GO:0016020
Viun10g02551 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 821 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02551 Viun-Chr10 39361371 39369079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02551 593 845 Calmodulin-binding Proteins AT2G36910 27.473 3.82e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02551 - - gmx:100813711 2374.36