Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02549 ATGATGATGATAATGATGATCTTCAATGGATACGCTGATGATTTCTCATGGATTTGTCTGAAACATTTTAAGTTCACTTCTTTCTGTTCACAAACGACCACAATAGACGCTATAAATCTATTTTTCGTCTGTGTCTTCTACGCTTCTACTATTGTCAGTTTAATCAGAAGAAATTTTATAAATGGAAGTCGTAGCAAAAGCAGGTTTTTCCTTATTGTTTCTATCTGTTGTGCTATCACTAGCATTGTGTTTTACGGTATTGGCTTGTGGAATCTCATAGCCAAAACTGGGAACTCCATGGCTACATGCGTTGTACGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCTTCTTCAGACACACGAATGGATCAAAGTTCTAAACACTATCTGGTGGGCAAGTTCCGGTGCACTATTTTCAACTATTCAAATTGAAATTCTATTTAGAAAGCATGCAATCGAAATTTTCGATGTCCTACTATGGCTCTTACACACGCTTCTTCTATTCTGTGCCTTCCAAAACCTTGGTTACTTTGTCACCCAAAGGGAACCAAAAAGTTTATCTGAGCCACTTTTAGCACAGGAAGTTGAGACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCGTACTCAGTTTGGGTTACTCAAAACCACTATCTCTTGAAGATATCCCTTCCCTTCTTTCTGAAGATAAAGCAGACTTGTCCCACCAAAACTTCATGCATGCATGCAAATCCCTTGCAAGGGAGAGAAGCAACGAGAACAACAACAAGAACTTGGTGTTTTGGTCCATTGTAAGAACTCACTCAAAAGAGAACATATTAATAGCTGTTTACGCATTGCTCAGAACCATTGCTGTGAGTGTTTCCCCTTTAATACTCTATGCTTTTGTCAACTTTTCATATAGTAGGGATTCCGGGGATACAGATCTCAAAGAAGGTCTTATCATAGTGGGTTTTCTTATTCTCTCCAAAGTAGTTGAATCTGTGTCCCAGAGACATTGGTTTTTTAGTTCCAGGAGGTCAGGGTTGAAGATGAGATCGGCTCTGATGGTGGCAGTGTATGAAAAACAACTAAAACTTTCAAGCTCAGCAAGAACAAGACACTCAACAGGAGAAATTGTGAATTACATAGCTGTTGACGCGTATCGCATGGGAGAATGTCCATGGTGGTTTCATCTAACATGGGCATGTACGTTGCAAATTCTTCTATCTATCAGTATCCTTTATGGAGTTGTGGGAGTAGGTGCTCTTCCTGGTTTAGTCCCCCTTCTTATATGTGGACTTATCAATGTACCATTTGCCAAGTTCCTACAGAAGTGCATGGCACAGTTCATGATTTCACAGGACGAGCGTCTTAGAGCAACTTCAGAAATCCTTAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAATTTGGTTGAGAACCTTCGTGCGAAAGAGTTCGTTTGGCTATCTAAGTCACAGTTGTTGAAAGCTTATGGGTCATTTTTATATTGGGTGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGCTGTTTTCAATAGTGCTCCATTGAATGCTGGGACCATTTTTACTGTTCTTGCAACGTTGAGGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTATGATCCAAGTTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTCGACGAAGAACTAGACACCAGTGATGGTAACAGAAGCTATATAAACCGAAGTTCAACTAATGCGGTAGAAATCCAAGATGGCAACTTCATCTGGGACCATGAATCAGTGTCCCCAACATTGAGAGATCTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTAGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGCTTCGAGATAATATACTCTTCGGCAAGCCGATGGAGAAAACAAGATATGAGAGTGCAATTAAAGTTTGTGCTTTGGATAAGGATATCAATGATTTTAGCCATGGCGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAGAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTATCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAATCAGGAAATTATGGGAATCTCTTGACAGCTGGGACTGCCTTTGAACAACTTGTGAGTGCTCATAAGGAAGCAATTATAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGGGGAGATTTCAACAGAGGGTCAACTTGGGATACAACTTACACAAGAAGAAGAAAAAGAGATTGGTCATGTTGGCTTGAAGACATTCTGGGATTATATTTCATTTTCCAGATGTTCATTTATGCTGTTTGGGATAATGTTGGCACAACTTGCTTTTGTTGCTTTGCAGGCTGCATCAACACTTTGGCTTGCTTTAGCCACTGATATTCCAAATATAACTAGTGCCATCTTGATCGGGGTCTACTCATTTATTTCGTTTGCTAGTGCTGGGTTTGTATATATGAGGTCACTCTTGACCTCTTACCTTGCATTAAAAGCTTCCAAAGTTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACGAGAGCTTCATCAGATTTAAGTACTTTGGATTTTGATATACCTTATTCGACCACATTTGTAACATGTGTACCCATTGAAATTTTGGTGATGATTGGTGTAATGGTTTTAGTAACATGGCCAGTTCTCATTGCTGCCATTCCTGCAACAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAGGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCAATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGTAGCAATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTGATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGCTACGTGTCCTCGGGTCTTGTGGGGCTATCTCTCTCTTATGGTTTAACCTTGACAGGATCCTTCATATTTTGGACTCGATGGTATTGCAACTTACTAAACTATCTTATCTCTGTTGAACGAATCAAGCAATTCATTGACCTACCATCAGAACCTCCTGCTATTGTGAAGGACCACCAACCTCCCTCTTCATGGCCTTTCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGCAGCTTTAGAGAGGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAAGTACACTGATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGATATTCTGATAGATGGGATGAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAAGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGACATATGGAAGGCTTTAGAGAAATGTCAGCTGAAGGAAACTATCAGCCATAATCCAAATCTCTTGGATTCTAAGGTGAGTGATGAAGGTGGAAATTGGAGTTTGGGACAACGACAACTGTTTTGTCTTGGGAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACGGATGCAATTCTTCAAAGAATTATCAGACAAGAGTTTGAAGAATGCACAGTTATTACAGTGGCTCACAGGGTTCCAACTGTTATAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAACCTTCAAGACTAATGGACACCAACTCTTCATTCTCTAAGCTGGTAGCAGAATATTGGGCCAGTTGCAGCAAGAATTCCTCCTAA 4374 0.404 MMMIMMIFNGYADDFSWICLKHFKFTSFCSQTTTIDAINLFFVCVFYASTIVSLIRRNFINGSRSKSRFFLIVSICCAITSIVFYGIGLWNLIAKTGNSMATCVVRGFVWTSLAVSLLLQTHEWIKVLNTIWWASSGALFSTIQIEILFRKHAIEIFDVLLWLLHTLLLFCAFQNLGYFVTQREPKSLSEPLLAQEVETEETGLGRASFLSKLTFSWVNSVLSLGYSKPLSLEDIPSLLSEDKADLSHQNFMHACKSLARERSNENNNKNLVFWSIVRTHSKENILIAVYALLRTIAVSVSPLILYAFVNFSYSRDSGDTDLKEGLIIVGFLILSKVVESVSQRHWFFSSRRSGLKMRSALMVAVYEKQLKLSSSARTRHSTGEIVNYIAVDAYRMGECPWWFHLTWACTLQILLSISILYGVVGVGALPGLVPLLICGLINVPFAKFLQKCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKNLVENLRAKEFVWLSKSQLLKAYGSFLYWVSPTIVSAVVFLGCAVFNSAPLNAGTIFTVLATLRNLGEPVRMIPEALSVMIQVKVSFDRLNTFLFDEELDTSDGNRSYINRSSTNAVEIQDGNFIWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTLRDNILFGKPMEKTRYESAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYGNLLTAGTAFEQLVSAHKEAIIELDQNNENRTHREESQGVYKNQSEGEISTEGQLGIQLTQEEEKEIGHVGLKTFWDYISFSRCSFMLFGIMLAQLAFVALQAASTLWLALATDIPNITSAILIGVYSFISFASAGFVYMRSLLTSYLALKASKVFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSTLDFDIPYSTTFVTCVPIEILVMIGVMVLVTWPVLIAAIPATVASKYVQEYYQASSGELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVERFFKNYLKLVDTDATLFFHSNVAMEWLVLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYGLTLTGSFIFWTRWYCNLLNYLISVERIKQFIDLPSEPPAIVKDHQPPSSWPFKGRIDLQALEIRYRPNAPLVLKGITCSFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISHNPNLLDSKVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02549 1457 FunFam ABC transporter C family member 5 863 1194 - -
Viun10g02549 1457 Gene3D - 1196 1447 IPR027417 -
Viun10g02549 1457 CDD ABC_6TM_ABCC_D2 897 1188 IPR044726 GO:0140359
Viun10g02549 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 826 IPR027417 -
Viun10g02549 1457 SMART AAA_5 1239 1424 IPR003593 GO:0016887
Viun10g02549 1457 SMART AAA_5 631 804 IPR003593 GO:0016887
Viun10g02549 1457 FunFam Multidrug resistance protein associated1 582 847 - -
Viun10g02549 1457 ProSitePatterns ABC transporters family signature. 729 743 IPR017871 GO:0005524|GO:0016887
Viun10g02549 1457 Pfam ABC transporter 622 756 IPR003439 GO:0005524
Viun10g02549 1457 SUPERFAMILY ABC transporter transmembrane region 273 583 IPR036640 GO:0005524|GO:0016020
Viun10g02549 1457 CDD ABC_6TM_ABCC_D1 286 577 IPR044746 GO:0140359
Viun10g02549 1457 Gene3D ABC transporter type 1, transmembrane domain 866 1194 IPR036640 GO:0005524|GO:0016020
Viun10g02549 1457 Pfam ABC transporter transmembrane region 904 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02549 1457 Pfam ABC transporter transmembrane region 285 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02549 1457 FunFam ABC transporter C family member 10 268 585 - -
Viun10g02549 1457 Gene3D - 578 854 IPR027417 -
Viun10g02549 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 900 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02549 1457 SUPERFAMILY ABC transporter transmembrane region 886 1195 IPR036640 GO:0005524|GO:0016020
Viun10g02549 1457 Gene3D ABC transporter type 1, transmembrane domain 272 577 IPR036640 GO:0005524|GO:0016020
Viun10g02549 1457 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1449 - -
Viun10g02549 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1215 1447 IPR003439 GO:0005524
Viun10g02549 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02549 1457 MobiDBLite consensus disorder prediction 839 860 - -
Viun10g02549 1457 Pfam ABC transporter 1230 1378 IPR003439 GO:0005524
Viun10g02549 1457 CDD ABCC_MRP_domain1 604 804 - -
Viun10g02549 1457 CDD ABCC_MRP_domain2 1211 1431 - -
Viun10g02549 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 604 827 IPR003439 GO:0005524
Viun10g02549 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1202 1446 IPR027417 -
Viun10g02549 1457 FunFam ABC transporter C family member 3 1196 1447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02549 Viun-Chr10 39347759 39353610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02549 599 818 Calmodulin-binding Proteins AT2G36910 27.778 9.09e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02549 - - gmx:100784827 2350.86