Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02548 ATGATGATGATGATGGCGATGGTGATCTTCAATGGATACGCTGATGATTTCTCATGGATTTGTCTGAAACATTTTAAGTTCACTTCTTTCTGTTCACAAACGACCACAATAGACGCTATAAATCTATTTTTCGTCGGTGTCTTCTACGCTTCTACTATAGTCAGTTTAATCAGAAGAAATTTTATAAATGGAAGTCATAGCAAAAGCAGGTTTTTCCTTATTGTTTCTATCTGTTGTGCTATCACTAGCATTGTGTTTTACGGTGTTGGTTTGTGGAATCTCATAGCCAAAACTGGGAACTCCATGGCTACATGCGTTGTAAGTGGATTTGTTTGGACTTCTTTTGCAGTTTCTTTGCTTCTTCAGACACACAAATGGATCAGATTTCTAAACTCTGTCTGGTGGGCATGTTCCTGTGCACTATTTTCAGCTCTTCAAATTGAAATTCTGTGTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGCTCTTGCACATGCTTCTTCTATTCTGTGCCTTCCAAAACCTTGGTTACTTTGTTACCCAAAGTGAACCAAAAAGTTTATCTGAGCCACTTTTAGCTCAGGAAGTTGACACAGAAGAAACAGGACTAGGCCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCGTACTCAGTTTGGGTTACTCAAAGCCACTATCTCTTGAAGATATCCCTTCCCTTCTTTCTGAAGATAAAGCAGACTTGTCCCACCAAAACTTCATGCATGCATGCCAATCCCTTGCGAGGGAGAGAAGCAGCAAGGAAAACACCAAAAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGATAACATATTAATAGCTTTTTACGCATTGTTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAACAGTAGGGATTCCGGGGATACAAATCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTAGTTGAATCTGTGTCCCAGAGACATTGGTTTTTTAGTTCCAGAAGGTCAGGGTTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATGAAAAACAACTAAAACTTTCAAGCTCAGCAAGGACAAGACACTCAACAGGAGAAATTGTGAATTACATTGCTGTCGATGCGTATCGCATGGGAGAATTTTCATGGTGGTTTCATGTAACATGGGCATGTGTGCTGCAACTTCTTCTATCCATCAGTATCCTTTATGGAGTTGTGGGAGTAGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTGTATGTGGACTTCTCAATGTACCATTTGCCAAGTTCCTACAGAAGTGCATGGCACAGTTCATGATTTCACAGGACGAGCGTCTTAGAGCAACTTCAGAAATCCTAAATAGCATGAAAATCATCAAGTTGCAGTCCTGGGAAGACAAATTCAAGAATTTGGTTGAGAACCTTCGTGCGAAAGAGTTCGTTTGGCTATCTAAGGCGCAGATGTTGAAAGCATATGGGTCAAATTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGTTGTTTTCAATAGTGCTCCATTGAATGCCGGGACCATATTTACAGTTCTTGCATCGTTGAAGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTATTTTGATCCAAGTTAAGGTATCGTTTGATCGTCTCAATAGCTTTTTGTTTGATGAAGAACTAGACACCAGTGATGGTAACAGAAGCTATATAAACCGAAGTTCAACCAGTGCTGTAGAAATCCAAGCTGGCAACTTCATCTGGGACCATGAATCAGTGTCCCCAACATTGAGAGATCTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCTTCTCTTTTGTATGCAATACTAGGAGAGGTTCCCAAGATCTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCCTGGATACAAAGTGGGACGCTTCGAGATAATATACTCTTCGGCAAGCCAATGGAGAAAACAAGATATGAGAATGCCATTAAAGTTTGTGCTTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGGGGACAAAAGCAAAGGATTCAACTTGCTCGTGCTGTCTACAATGATGCTGACATCTATCTCCTAGATGATCCTTTCAGTGCAGTTGATGCTCACACAGCAGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAGAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTATCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAATCAGGAAATTACGAGAACCTCTTGACAGCTGGGACTGCATTTGAACAACTTGTGAGTGCTCACAAGGAAGCAATTATAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGGGGAGATTTCAACAGAGGGTCAACTTGGGATACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGATTGAAGACATTCTGGGATTATATTTCATTTTCCAGATGTTCATTGATGCTGTTTGGGATATTGTTGGCACAACTTGCTTTTGTTGCTTTTCAGACTGGATCAACGGTTTGGCTTGCTTTAGCGATTGATATTCCAAAAATAACTAGTGCCACCTTGATTGGGGTGTACTCATTAATTTCCTTTGCTAGTGCTGGGTTTATATATATAAGGTCTCTCTTGACCTCTTACCTTGGATTAAAAGCTTCCAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCGACCACCTTTGTAATATGTGTACCAAGTGAAATTTTGGCAACGATTGGTGTAATGGTTTTAGTAACATGGCCAGTTCTCATTGCTGCCATTCCCTCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCACGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCCCCTGTGATGAATTTTGCAGCTGAGACATCACATGGTGTGGTTACTGTAAGAGCATTCAATATGGTAGAAAGATTTTTTCAAAACTACTTAAAGCTTGTGGACACAGACGCAAAACTGTTTTTCCATTCTAATGTGACCACAGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATATGACAGTCATCGCTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGGCTAGCTCTCTCTTACGCATTAACCTTGACATCATCAATCATATTTTGGACTCGATGGTATTGCAACTTATTAAACTATCTTATCTCTGTTGAGAGAATCAAGCAATTCATTCACTTACCATCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCCTCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATACCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACCTTTAGGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAAGTACACTGATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGATATTCTGATAGATGGGATGAACATATGCTCAATGGGGTTGAAAGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAAGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGACATATGGAAGGCTTTAGAGAAATGTCAGCTGAAGGAAACTATCAGCCATAATCCAAATCTCTTGGATTCTAAGGTGAGTGATGAAGGTGGAAATTGGAGTTTGGGACAACGACAACTGTTTTGTCTTGGGAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACGGATGCAATTCTTCAAAGAATTATCAGACAAGAGTTTGAAGAATGCACAGTTATTACAGTGGCTCACAGGGTTCCAACTGTTATAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAACCTTCAAGACTAATGGACACCAACTCTTCATTCTCTAAGCTGGTAGCAGAATATTGGGCCAGTTGCAGCAAGAACTCCTCCTAA 4380 0.4053 MMMMMAMVIFNGYADDFSWICLKHFKFTSFCSQTTTIDAINLFFVGVFYASTIVSLIRRNFINGSHSKSRFFLIVSICCAITSIVFYGVGLWNLIAKTGNSMATCVVSGFVWTSFAVSLLLQTHKWIRFLNSVWWACSCALFSALQIEILCRKHAIEIFDVLLWLLHMLLLFCAFQNLGYFVTQSEPKSLSEPLLAQEVDTEETGLGRASFLSKLTFSWVNSVLSLGYSKPLSLEDIPSLLSEDKADLSHQNFMHACQSLARERSSKENTKNLVFWSIVRTHLKDNILIAFYALFRTIAVTVSPLILYAFVNFSNSRDSGDTNLREGLTIVGFLILSKVVESVSQRHWFFSSRRSGLKMRSALMVAVYEKQLKLSSSARTRHSTGEIVNYIAVDAYRMGEFSWWFHVTWACVLQLLLSISILYGVVGVGALPGLVPLLVCGLLNVPFAKFLQKCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKNLVENLRAKEFVWLSKAQMLKAYGSNLYWMSPTIVSAVVFLGCVVFNSAPLNAGTIFTVLASLKNLGEPVRMIPEALSILIQVKVSFDRLNSFLFDEELDTSDGNRSYINRSSTSAVEIQAGNFIWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAILGEVPKISGTVNVFGNIAYVSQTSWIQSGTLRDNILFGKPMEKTRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYENLLTAGTAFEQLVSAHKEAIIELDQNNENRTHREESQGVYKNQSEGEISTEGQLGIQLTQEEEKEIGDVGLKTFWDYISFSRCSLMLFGILLAQLAFVAFQTGSTVWLALAIDIPKITSATLIGVYSLISFASAGFIYIRSLLTSYLGLKASKAFFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPYSTTFVICVPSEILATIGVMVLVTWPVLIAAIPSIVASKYVQEYYQATSRELMRINGTTKAPVMNFAAETSHGVVTVRAFNMVERFFQNYLKLVDTDAKLFFHSNVTTEWLLLRIEALQNMTVIASALLLVLFPQGYVSSGLVGLALSYALTLTSSIIFWTRWYCNLLNYLISVERIKQFIHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISHNPNLLDSKVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02548 1459 MobiDBLite consensus disorder prediction 841 862 - -
Viun10g02548 1459 Pfam ABC transporter transmembrane region 287 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02548 1459 Pfam ABC transporter transmembrane region 896 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02548 1459 FunFam Multidrug resistance protein associated1 584 849 - -
Viun10g02548 1459 FunFam ABC transporter C family member 5 865 1196 - -
Viun10g02548 1459 SUPERFAMILY ABC transporter transmembrane region 275 585 IPR036640 GO:0005524|GO:0016020
Viun10g02548 1459 Gene3D ABC transporter type 1, transmembrane domain 274 579 IPR036640 GO:0005524|GO:0016020
Viun10g02548 1459 Gene3D - 1198 1449 IPR027417 -
Viun10g02548 1459 Gene3D - 580 856 IPR027417 -
Viun10g02548 1459 SUPERFAMILY ABC transporter transmembrane region 888 1197 IPR036640 GO:0005524|GO:0016020
Viun10g02548 1459 ProSitePatterns ABC transporters family signature. 731 745 IPR017871 GO:0005524|GO:0016887
Viun10g02548 1459 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 208 1451 - -
Viun10g02548 1459 Pfam ABC transporter 1232 1380 IPR003439 GO:0005524
Viun10g02548 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1217 1449 IPR003439 GO:0005524
Viun10g02548 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 287 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02548 1459 CDD ABCC_MRP_domain1 606 806 - -
Viun10g02548 1459 CDD ABC_6TM_ABCC_D1 288 579 IPR044746 GO:0140359
Viun10g02548 1459 SMART AAA_5 633 806 IPR003593 GO:0016887
Viun10g02548 1459 SMART AAA_5 1241 1426 IPR003593 GO:0016887
Viun10g02548 1459 CDD ABCC_MRP_domain2 1213 1433 - -
Viun10g02548 1459 Gene3D ABC transporter type 1, transmembrane domain 868 1196 IPR036640 GO:0005524|GO:0016020
Viun10g02548 1459 Pfam ABC transporter 624 758 IPR003439 GO:0005524
Viun10g02548 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1205 1448 IPR027417 -
Viun10g02548 1459 FunFam ABC transporter C family member 3 1198 1449 - -
Viun10g02548 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 902 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02548 1459 CDD ABC_6TM_ABCC_D2 899 1190 IPR044726 GO:0140359
Viun10g02548 1459 FunFam ABC transporter C family member 10 270 587 - -
Viun10g02548 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 828 IPR027417 -
Viun10g02548 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 829 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02548 Viun-Chr10 39337600 39343586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02548 594 820 Calmodulin-binding Proteins AT2G36910 27.600 4.95e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02548 - - gmx:100784827 2367.42