Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02547 ATGATGATGATGATGATCTTCAATGGATACGCTGATGATTTCTCATGGAATTGTCTGAAGCATTTTGAGCTCACTTCTTTCTGTACGCAAAGGACCACAATAGACACCATAAATCTAATCTTCGTCTGTGTCTTCTACGCTTCCACGATTCTCAGTTTAATCACAAGAAATTTTATAAATGGAAGTCATAGAAAAAGCAGGTTTTTCCTTACTGTTTGTATCTGTTGTGCTATCACTAGCATTGTGTTTTACGGTATTGGTTTGTGGAATCTCATAGCCAAAACTGGGAACTCCATGGCTACATGCGTTGTAAGAGGATTTGTTTGGACTTCTTTTGCAGTTTCTTTGCTTCTTCAGACACACAAATGGATCAAAGTTCTAAACTCTCTCTGGTGGGCATGTTCCTGTGCACTTGTTTCAGCTCTCCACATTCAAATTTTGTTTAGAAACCATACCATAGAAATTTTCGATCTCCTACAATGGCTCTTACAGATGCTTCTTCTCTTCTGTGCCCTTCAAAACCTTGGTTACTTTGTCACTCAAAGTGAGCAAGGAAATTTATCTGAGCCATTGTTAGCTCAGGAAGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAAGCCACTGTCTCTTGAAGATATCCCTTCCCTTCTTTCTGAAGATAAAGCAGACTTGTCCCACCAAAACTTCATGCATGCATGCCAATCCCTTGTGACGGAGAGAAGCGAAAACAACACCAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATAGCTGTTTACGCATTGTTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATAGTAGGGATTCTGGGGATACAGCTCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTAGTTGAATCTGTGTCCCAGAGACACTGGTACTTTTGTTCCAGGAGGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATGAAAAACAACTAAAACTTTCAAGCTCAGCAAGAACAAGACACTCAACAGGAGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATGTCCATGGTGGTTTCATCTAACCTGGGCATGTACGTTGCAACTTCTTCTATCTATCACTATCCTTTATGGAGTTGTGGGAGTTGGTGCGCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGATTTATCAATGTGCCAATTGCCAAGATACTGCAAAAGTGCATGGCACAGTTCATGATTTCACAGGACGAGCGTCTTAGAGCAACTTCAGAAATACTCAATAGCATGAAAATCATCAAGTTGCAGTCCTGGGAAGACAAATTCAAGAATTTGGTTGAGAACCTTCGTGCGAAAGAGTTCGTTTGGCTATCTAAGGCACAGATGTTGAAAGCTTATGGGTCATTTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGTTGTTTTCAATAGTGCTCCATTGAATGCTGGGACCATTTTTACTGTTCTTGCAACGTTGAGGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTATGATCCAAATTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTTGATGAAGAACTAGATACCAGTGATGGTAACAGAAGCTATATAAACCGAAGTTCAACTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTGTCCCCAACATTGAGAGATCTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCTTCTCTTTTGTATGCAATACTAGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATACAAAGTGGGACGCTTCGAGATAATATACTCTTCGGGAAGCCAATGGAGAAAACAAGATATGAGAGTGCCATTAAAGTTTGTGCTTTGGACAAGGATATCAATGATTTTAGCCATGGTGATCATACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAACGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGGGAAAACAGTCATTCTTGTGACACATCAAGTGGAGTTTCTATCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAATCAGGAAATTATGAGAATCTCTTAACAGCTGGGACTGCATTTGAAGAACTTGTGAGTGCTCACAAGGAAGCAATTATAGAGGTGGATCCGAAGAATGAGAACAAAACTTACAGAGAAGAAGAGTCTGAGAATGTTTATCGCACTAAAAATCAGAATGAGGGGGAGATTTCAACAGAGGGTCGACTTGGGATACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTAAAGACATTCTGGGATTATATTTCCATTTCCAGAGGTTCATTGATGCTGTTTGGGATAATGTTGGTACAATTTGCTTTTGTTGCTTTGCAGGCTGCATCAACGGTTTGGCTTGCTTTAGCCATTGAAATTCCAAAAATAAATAGTGTCACTTTGATTGGGTTGTACTCATTAATTTCATTTGCTAGTGCTGGGTTTATATATATAAGGGCTCTCTTGACCTCTTACCTCGGATTAAAAGCTTCAAAAGCTTTCTTCACAAATTTCAATACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACGAGAGCCTCGTCAGATTTAAGTAATTTGGACTTTGATATACCATATTCGATTACCTTTGTAGCATGTGTAGCAGTTGAAATTCTGGTGACAATTTGCATAATTGTTTTAGTAACTTGGCCAGTTGTCATCGTTGCCATTGCTGCTCTAGTTGCATCCAAATATGTTCAGGTATATTATCAAGCCTCGTCTAGGGAATTAATGAGGATCAATGGAATCACAAAAGCTCCTGTGATGAATTTTGCAACTGAGACATCTCTTGGTGTGGTTACTGTAAGAGCATTCAATATGGTAGAAAGTTTCTTTAAGAATTACTTAAAGCTTGTGGACACAGACGCAACACTTTTTTTTCATTCTAATGTGACCATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGCCATCACTGTAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGGTTATCTCTCTCTTACGCATTAACCTTGACATCATCAATCATATTTTGGACTCGATGGTATTGCAGCTTATTAAACTATCTTATCTCTGTTGAGAGAATCAAGCAATTCATTCACTTACCATCAGAGCCTCCTGCTATTGTGAAGGACCACCAACCTCCCTCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACCTTTAGGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAAGTACACTGATAAGTGCCTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGATATTCTGATAGATGGGATAAACATATGCTCAATGGGGTTGAGGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGACATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTAAGGTGAGTGATGAAGGTGGAAATTGGAGTTTGGGACAACGACAACTGTTTTGTCTTGGGAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACGGATGCAATTCTTCAAAGAATTATCAGACAAGAGTTTGAAGAATGCACAGTTATTACAGTGGCTCACAGGGTTCCAACTGTTATAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTTAAAACTAATGGACACCGATTCTTCATTCTCTAAACTGGTAGCTGAATATTGGGCCAGTTGCAGCAAGAATTCCTCCTAA 4377 0.4039 MMMMMIFNGYADDFSWNCLKHFELTSFCTQRTTIDTINLIFVCVFYASTILSLITRNFINGSHRKSRFFLTVCICCAITSIVFYGIGLWNLIAKTGNSMATCVVRGFVWTSFAVSLLLQTHKWIKVLNSLWWACSCALVSALHIQILFRNHTIEIFDLLQWLLQMLLLFCALQNLGYFVTQSEQGNLSEPLLAQEVDTEETGLGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKADLSHQNFMHACQSLVTERSENNTKNLVFWSIVRTHLKENILIAVYALFRTIAVTVSPLILYAFVNFSNSRDSGDTALREGLTIVGFLILSKVVESVSQRHWYFCSRRSGLKMRSALMVAVYEKQLKLSSSARTRHSTGEIVNYIAVDAYRMGECPWWFHLTWACTLQLLLSITILYGVVGVGALPGLVPLLICGFINVPIAKILQKCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKNLVENLRAKEFVWLSKAQMLKAYGSFLYWMSPTIVSAVVFLGCVVFNSAPLNAGTIFTVLATLRNLGEPVRMIPEALSVMIQIKVSFDRLNTFLFDEELDTSDGNRSYINRSSTNAVEIQAGNFIWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTLRDNILFGKPMEKTRYESAIKVCALDKDINDFSHGDHTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALRGKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYENLLTAGTAFEELVSAHKEAIIEVDPKNENKTYREEESENVYRTKNQNEGEISTEGRLGIQLTQEEEKEIGDVGLKTFWDYISISRGSLMLFGIMLVQFAFVALQAASTVWLALAIEIPKINSVTLIGLYSLISFASAGFIYIRALLTSYLGLKASKAFFTNFNTAIFNAPMLFFDSTPVGRILTRASSDLSNLDFDIPYSITFVACVAVEILVTICIIVLVTWPVVIVAIAALVASKYVQVYYQASSRELMRINGITKAPVMNFATETSLGVVTVRAFNMVESFFKNYLKLVDTDATLFFHSNVTMEWLLLRIEALQNLTAITVALLLVLFPQGYVSSGLVGLSLSYALTLTSSIIFWTRWYCSLLNYLISVERIKQFIHLPSEPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLRDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISHLPNLLDSKVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPLKLMDTDSSFSKLVAEYWASCSKNSS 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02547 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 901 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02547 1458 CDD ABCC_MRP_domain1 602 802 - -
Viun10g02547 1458 CDD ABC_6TM_ABCC_D1 284 575 IPR044746 GO:0140359
Viun10g02547 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 824 IPR027417 -
Viun10g02547 1458 SMART AAA_5 629 802 IPR003593 GO:0016887
Viun10g02547 1458 SMART AAA_5 1240 1433 IPR003593 GO:0016887
Viun10g02547 1458 FunFam Multidrug resistance protein associated1 580 845 - -
Viun10g02547 1458 CDD ABC_6TM_ABCC_D2 896 1189 IPR044726 GO:0140359
Viun10g02547 1458 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524|GO:0016887
Viun10g02547 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1204 1447 IPR027417 -
Viun10g02547 1458 CDD ABCC_MRP_domain2 1212 1432 - -
Viun10g02547 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1448 IPR003439 GO:0005524
Viun10g02547 1458 FunFam ABC transporter C family member 5 864 1195 - -
Viun10g02547 1458 Pfam ABC transporter 1231 1379 IPR003439 GO:0005524
Viun10g02547 1458 Pfam ABC transporter transmembrane region 916 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02547 1458 Pfam ABC transporter transmembrane region 283 546 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02547 1458 Gene3D ABC transporter type 1, transmembrane domain 270 575 IPR036640 GO:0005524|GO:0016020
Viun10g02547 1458 Gene3D - 576 852 IPR027417 -
Viun10g02547 1458 SUPERFAMILY ABC transporter transmembrane region 898 1196 IPR036640 GO:0005524|GO:0016020
Viun10g02547 1458 Gene3D - 1197 1448 IPR027417 -
Viun10g02547 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 283 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02547 1458 Gene3D ABC transporter type 1, transmembrane domain 867 1195 IPR036640 GO:0005524|GO:0016020
Viun10g02547 1458 FunFam ABC transporter C family member 3 1197 1448 - -
Viun10g02547 1458 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 205 1450 - -
Viun10g02547 1458 FunFam ABC transporter C family member 10 266 583 - -
Viun10g02547 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 604 825 IPR003439 GO:0005524
Viun10g02547 1458 Pfam ABC transporter 620 754 IPR003439 GO:0005524
Viun10g02547 1458 SUPERFAMILY ABC transporter transmembrane region 271 581 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02547 Viun-Chr10 39327342 39333011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02547 597 867 Calmodulin-binding Proteins AT2G36910 25.773 4.00e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02547 - - gmx:100784827 2331.98