Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02546 ATGAGTCGAGAGCAACAGAAGCGGGGGAAGCAAGAGAAAGGTTCCGATGGTGCTGAGAAGGTCATTGTTGCCGTTAAGGCATCAAAAGAAATTCCAAAAACTGCTCTTGTTTGGTCCCTGACCCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATTATGGGGGTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATTCTTCAACTCCATAATGTCTATGATCCAAACAAGATCAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAAAAAGCACAAGCCAATTGGGTCGTGTTAGACAAACAGCTCAAGCATGAAGAAAAGCGATGCATGGAAGAACTACAGTGTAACATCGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCCGAAGAAGGATGTTGAAGAAGCAGGTCCATCACCTCCTGAGCAAGATGACATGTCTGAAAAGCGAAGCAAAATAAAGCTTGATTCCTTAAATTCTATCAAAGGACCTGCTGTAACTCCATCTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACTGAAGCTGGTACTTCATCAGTGTCAAGCTCTGATCCGGGAACTTCACCATTCTTCATCTCAGAGACGAATGGTGAGTCCAAAAAGGAGGAAACTATCCTAGAAAGTCAAGAGCTTTGTGATACTAATTCAGAAACTGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCATGAGATACCAACCATGGATCACAGAATTGCTTTTGCATCAACAATCATCACAACGCAATGAAGAGAGATCAGAGACAACTCATGGTATGCCTCAAGCTTCTACAACCAGAGCTTTCCTAGATAAGTATTCTAGGCTTGATAGAGGAGCTGGATTTGAAATCTCAACCTATAGGAATGACATGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCTCCTCCACTGTGTTCAATATGTCAACACAAAGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTAGAACTTGCTACAGGCGGTTTTTCGCAGGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCATAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTGAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAATTTTGTTCAGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAACGGATCATTGGATTCTCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCTGCACGGCAAAAAATTGCTGTTGGTGCAGCTCGTGGATTACGATATCTTCATGAAGAGTGCAGAGTTGGTTGCATTATCCACCGTGATATGAGGCCAAACAACATTCTCATAACTCACGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCGAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACTGGGAGAAAAGCTGTGGATCTCACTAGGCCAAAGGGACAGCAGTGCCTTACCGAGTGGGCACGACCTCTCTTAGAAGATTATGCAACCGAGGAACTGATTGATCCAAGACTTGGTAACCACTATTCTGAAAATGAGGTGTATTGCATGCTCCATGCTGCCTCATTATGCATTCAGCGAGATCCTCAATGTAGACCACGCATGTCACAGGTTCTGCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATCTCCACTCCAGGCTATGATGCAGGAAACCGAAGTGGTAGACTGTGGTCAGAGCCATTGCAAAGGCAGCACCATTATAGTGGTCCCCTTTTAGAAGAGACTCTGGAGTCCTTCAGTGGGAAGCTATCCCTTGAAAAGTACAAGCCTTCCTACTGGGGTGATAGGGACAAGGCTAGAAGGGCCTCATGTGAAGATGACATTTGA 2253 0.4452 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPPKKDVEEAGPSPPEQDDMSEKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFISETNGESKKEETILESQELCDTNSETESESLSTSSASMRYQPWITELLLHQQSSQRNEERSETTHGMPQASTTRAFLDKYSRLDRGAGFEISTYRNDMDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEDYATEELIDPRLGNHYSENEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEETLESFSGKLSLEKYKPSYWGDRDKARRASCEDDI 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02546 750 MobiDBLite consensus disorder prediction 303 324 - -
Viun10g02546 750 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Viun10g02546 750 MobiDBLite consensus disorder prediction 214 255 - -
Viun10g02546 750 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Viun10g02546 750 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Viun10g02546 750 FunFam Dual-specific kinase DSK1-like 12 166 - -
Viun10g02546 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 682 - -
Viun10g02546 750 Pfam Protein tyrosine and serine/threonine kinase 407 672 IPR001245 GO:0004672|GO:0006468
Viun10g02546 750 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02546 750 MobiDBLite consensus disorder prediction 175 288 - -
Viun10g02546 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Viun10g02546 750 MobiDBLite consensus disorder prediction 269 288 - -
Viun10g02546 750 CDD STKc_IRAK 409 675 - -
Viun10g02546 750 MobiDBLite consensus disorder prediction 187 208 - -
Viun10g02546 750 PANTHER OS01G0750732 PROTEIN 237 681 - -
Viun10g02546 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02546 Viun-Chr10 39309506 39315235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02546 383 692 Trihelix Transcription Factor Family AT1G70460 51.097 4.79e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun10g02546 PK_Tyr_Ser-Thr 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02546 - - gmx:100816340 1443.33