Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02541 ATGAATATTTTAAGTATTACAACTGTGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATAGTTTTTCTTGTTTTCAGTGTTTATGTACAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACATTCTTCCATACTGGGGAAGTTCCATATTCAGGCTCAGCAGCTGCTGAAGAAAGGAGGTTTGATCAATGGATTGTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTGAAATTGAAGTTTATGCTGTGGTTCAAACCAGCAAATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAAGGAGGCTAGTTTCCCACTAAGGTCAAATTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCATCTTTTCAACCTCCCTTTGATCTGTGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGCTGGTCCTTCAATCCCATGACGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCAAGAGGAATTAAGTTAGGTGACCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCATTTGTGAAGAACAAAGGTGAATTGAACAACCAAGATGAGGAAGCTTTTGCATTTTTCAACCACACAAAAGTGATATGCAGAAAGTGTTCCAGATTGCACCATATGTTCCCAACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAAGCACCAAAATCTGTTGATGACAGAGAGCTTATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATCAGGGAATCTCATTGCTATGATTTCTACCAAACAAGCATAGCAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTGATCCCTTCTAGCACTTTGGCAAATCTTATGCCAAAGACAAGCTCAAGCACTCATAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTGGTGAGTTATCTACTGTAGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAGAGATTTATATACATTGAGAGCCAATATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTGATTCCCATTGAAATTGCACTGAAGGTGGTGAGTAAGATTAAGGCAAAGGAGAGATTTTCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGATTGATTGGAGAAGCAATACAAGAAAGTGAGGAACCAGCACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAACAGAAGGGACCAGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACATATACATACTGATAGGATCAGCTAACATAAACCAAAGATCCATGGATGGGAAAAGGGACACTGAGATTGCAATGGGATGCTACCAGTTTCAAGATGAAGATGATGATCACCAAATGAACATTGATGAAGTTCAAGCATATAGATTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAATTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATAAGGGACATGGAAGGTGTGCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCATTGATGGAGTTCATTTTCCTGATACAAATTCTCTGGTGAAAGGGAAAAGGTCTAAAATATTGCCTCCTATCTTCACCATTTAG 2319 0.4101 MNILSITTVEETPKLLHGTIEATIFNASPYSPLFPFNSFSCFQCLCTNGKPAYVTIKIDNQKFAKTSEESNRVWNQTFQIQCAHPADSCITITLKTSHSSILGKFHIQAQQLLKKGGLINGLFPLLMDNGKPNPKLKLKFMLWFKPANLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSSFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMTVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCSRLHHMFPTLFAHHQKTITVDTKAPKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIAEASLNKGGPRAPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSFLIPSSTLANLMPKTSSSTHRERNWKVQIYRSIDHISVGELSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFSVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEEPAHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDIYILIGSANINQRSMDGKRDTEIAMGCYQFQDEDDDHQMNIDEVQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEIRDMEGVHLVSYPVRVTPEGYVKDLIDGVHFPDTNSLVKGKRSKILPPIFTI 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02541 772 PIRSF PLD_plant 6 772 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Viun10g02541 772 Pfam C2 domain 52 125 IPR000008 -
Viun10g02541 772 Gene3D Endonuclease Chain A 189 445 - -
Viun10g02541 772 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 140 IPR035892 -
Viun10g02541 772 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 312 349 IPR001736 GO:0003824
Viun10g02541 772 PANTHER PHOSPHOLIPASE D 15 754 IPR015679 -
Viun10g02541 772 SUPERFAMILY Phospholipase D/nuclease 171 420 - -
Viun10g02541 772 ProSitePatterns EF-hand calcium-binding domain. 662 674 IPR018247 -
Viun10g02541 772 Gene3D C2 domain 39 145 IPR035892 -
Viun10g02541 772 Pfam Phospholipase D C terminal 690 761 IPR024632 -
Viun10g02541 772 SUPERFAMILY Phospholipase D/nuclease 443 700 - -
Viun10g02541 772 Gene3D Endonuclease Chain A 459 667 - -
Viun10g02541 772 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 617 644 IPR001736 GO:0003824
Viun10g02541 772 SMART pld_4 617 644 IPR001736 GO:0003824
Viun10g02541 772 SMART pld_4 312 349 IPR001736 GO:0003824
Viun10g02541 772 Pfam Phospholipase D Active site motif 313 349 IPR001736 GO:0003824
Viun10g02541 772 Pfam Phospholipase D Active site motif 620 644 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02541 Viun-Chr10 39289064 39292241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02541 39 771 Phospholipase D Gene Family (Wang group) AT1G55180 61.580 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02541 K01115 - gmx:100789235 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02541 10 39289064 39292241 Viun10g02541 10 39289064 39292241 ECH
Viun5g03799 5 46636247 46639228 Viun10g02541 10 39289064 39292241 PCT