LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g02540	ATGAATATTTTAAGTATTACAACTGTGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATTGTTTATGTACAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACATTCTTCCATACTGGGGAAGTTCCATATTCAGGCTCAGCAGCTGCTGAAGAAAGGAGGTTTGATCAATGGATTGTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTGAAATTGAAGTTTATGCTGTGGTTCAAACCAGCAAATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAAGGAGGCTAGTTTCCCACTAAGGTCAAATTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCATCTTTTCAACCTCCCTTTGATCTGTGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGCTGGTCCTTCAATCCCATGACGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCAAGAGGAATTAAGTTAGGTGACCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCATTTGTGAAGAACAAAGGTGAATTGAACAACCAAGATGAGGAAGCTTTTGCATTTTTCAACCACACAAAAGTGATATGCAGAAAGTGTTCCAGATTGCACCATATGTTCCCAACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAAGCACCAAAATCTGTTGATGACAGAGAGCTTATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATCAGGGAATCTCATTGCTATGATTTCTACCAAACAAGCATAGCAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTGATCCCTTCTAGCACTTTGGCAAATCTTATGCCAAAGACAAGCTCAAGCACTCATAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTGGTGAGTTATCTACTGTAGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAGAGATTTATATACATTGAGAGCCAATATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTGATTCCCATTGAAATTGCACTGAAGGTGGTGAGTAAGATTAAGGCAAAGGAGAGATTTTCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGATTGATTGGAGAAGCAATACAAGAAAGTGAGGAACCAGCACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAACAGAAGGGACCAGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACATATACATACTGATAGGATCAGCTAACATAAACCAAAGATCCATGGATGGGAAAAGGGACACTGAGATTGCAATGGGATGCTACCAGTTTCAAGATGAAGATGATGATCACCAAATGAACATTGATGAAGTTCAAGCATATAGATTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAATTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATAAGGGACATGGAAGGTGTGCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCATTGATGGAGTTCATTTTCCTGATACAAATTCTCTGGTGAAAGGGAAAAGGTCTAAAATATTGCCTCCTATCTTCACCATTTAG	2301	0.4111	MNILSITTVEETPKLLHGTIEATIFNASPYSPLFPFNCLCTNGKPAYVTIKIDNQKFAKTSEESNRVWNQTFQIQCAHPADSCITITLKTSHSSILGKFHIQAQQLLKKGGLINGLFPLLMDNGKPNPKLKLKFMLWFKPANLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSSFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMTVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCSRLHHMFPTLFAHHQKTITVDTKAPKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIAEASLNKGGPRAPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSFLIPSSTLANLMPKTSSSTHRERNWKVQIYRSIDHISVGELSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFSVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEEPAHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDIYILIGSANINQRSMDGKRDTEIAMGCYQFQDEDDDHQMNIDEVQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEIRDMEGVHLVSYPVRVTPEGYVKDLIDGVHFPDTNSLVKGKRSKILPPIFTI	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g02540	766	ProSitePatterns	EF-hand calcium-binding domain.	656	668	IPR018247	-
	Viun10g02540	766	PANTHER	PHOSPHOLIPASE D	15	748	IPR015679	-
	Viun10g02540	766	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	14	134	IPR035892	-
	Viun10g02540	766	Pfam	Phospholipase D C terminal	684	755	IPR024632	-
	Viun10g02540	766	SUPERFAMILY	Phospholipase D/nuclease	437	694	-	-
	Viun10g02540	766	Gene3D	Endonuclease Chain A	453	661	-	-
	Viun10g02540	766	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	611	638	IPR001736	GO:0003824
	Viun10g02540	766	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	306	343	IPR001736	GO:0003824
	Viun10g02540	766	Pfam	Phospholipase D Active site motif	614	638	IPR001736	GO:0003824
	Viun10g02540	766	Pfam	Phospholipase D Active site motif	307	343	IPR001736	GO:0003824
	Viun10g02540	766	Pfam	C2 domain	46	119	IPR000008	-
	Viun10g02540	766	Gene3D	Endonuclease Chain A	183	439	-	-
	Viun10g02540	766	PIRSF	PLD_plant	7	766	IPR011402	GO:0004630\|GO:0005509\|GO:0016020\|GO:0046470
	Viun10g02540	766	SMART	pld_4	611	638	IPR001736	GO:0003824
	Viun10g02540	766	SMART	pld_4	306	343	IPR001736	GO:0003824
	Viun10g02540	766	SUPERFAMILY	Phospholipase D/nuclease	165	414	-	-
	Viun10g02540	766	Gene3D	C2 domain	38	139	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g02540	Viun-Chr10	39289064	39292241	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g02540	38	765	Phospholipase D Gene Family (Wang group)	AT1G55180	61.725	0.0	945

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g02540	K01115		-	gmx:100812642	1481.46