Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02519 ATGGAGATGAAGGGTTTTGTGTTCAACCAACAACATCAGCAGCAGCAGCAGCAGCAACAAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAACAATACTTGCCTCCACCACCAACAACTCAGACTCAGCAGCCACCAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCTACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGGGACCAGAACCTGCAACTTCACAGAAGAGGGCACAATTTGCCTTGGAAGCTGAAGCAGAGAACGAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAAGCAAATTGTGTGCATCATGACCCATCAAGGGCTCTGGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAAACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACTGGCACAGCCAACAACAACCAGCTTCTTCCCCCACAACCTTCTTCTTCTTCCTCTCATCATCATCATCAGCACCACCACCACACCAACAACAACAACATGACCCTTCAAACCCAATTCAACCCTCAGAATCTCCATGCTTTCTCATTGAAAAAAGAGCAGCAAAGTTTCAATCTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCCTCAGAGATGTTCTCTCCCTCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGGCCAGGGCCCACCATCAGGTTCACATGACTTCTTCACCAGATTCTGCCACTGCTCACTTTGGCTTCAACTTGTCCTCACGTGATCAACACAACACCACCACCACCACTTCAACAACACCAACCACTGTCACGACTAACACTGCTACAGTGTTTAGCCATGGCTTCTTATCATCATCATCATCACCTTTGGGGAATAAAGCTGCTGCTGCTACTGTGTCTTCTGCTCCTTCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTGCATTCCAAGGAACCCCTTTTGAGGATGCGTTTGGTGGCATTCAGAGTTCAAAAAAACTTGATGATGACGATAGCTTGTATCTGCATGACACCTTCTCCAAAACAAGTGGTGCAGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGACCTCTCTCTCATAATGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCAGCAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1602 0.475 MEMKGFVFNQQHQQQQQQQQVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLPPPPTTQTQQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTANNNQLLPPQPSSSSSHHHHQHHHHTNNNNMTLQTQFNPQNLHAFSLKKEQQSFNLRPEMPPWLGPPSEMFSPSPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSPDSATAHFGFNLSSRDQHNTTTTTSTTPTTVTTNTATVFSHGFLSSSSSPLGNKAAAATVSSAPSLLHDVINSFSSPSAFQGTPFEDAFGGIQSSKKLDDDDSLYLHDTFSKTSGAAGNEGLTRDFLGLRPLSHNDILTIAGIGNCIHDQQNQSQKPWQG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02519 533 MobiDBLite consensus disorder prediction 236 268 - -
Viun10g02519 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 511 IPR031140 -
Viun10g02519 533 Gene3D Classic Zinc Finger 78 147 - -
Viun10g02519 533 MobiDBLite consensus disorder prediction 7 51 - -
Viun10g02519 533 Pfam Zinc-finger double-stranded RNA-binding 97 119 IPR022755 -
Viun10g02519 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Viun10g02519 533 SUPERFAMILY beta-beta-alpha zinc fingers 96 193 IPR036236 -
Viun10g02519 533 MobiDBLite consensus disorder prediction 296 317 - -
Viun10g02519 533 MobiDBLite consensus disorder prediction 236 250 - -
Viun10g02519 533 Gene3D Classic Zinc Finger 151 231 - -
Viun10g02519 533 MobiDBLite consensus disorder prediction 1 82 - -
Viun10g02519 533 FunFam protein indeterminate-domain 12-like 76 144 - -
Viun10g02519 533 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Viun10g02519 533 SMART c2h2final6 97 119 IPR013087 -
Viun10g02519 533 SMART c2h2final6 173 193 IPR013087 -
Viun10g02519 533 SMART c2h2final6 138 168 IPR013087 -
Viun10g02519 533 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02519 Viun-Chr10 39140869 39144166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02519 26 533 IDZ Gene Family AT3G13810 48.115 1.58e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun10g02519 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02519 K25870 - gmx:100808344 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03779 5 46473600 46476327 Viun10g02519 10 39140869 39144166 PCT