Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02506 ATGGGACACCACTCTTGCTGCAACAAACAGAAGGTCAAAAGAGGGCTCTGGTCACCCGAAGAAGATGAAAAACTCATCAACTACATCACAACTTACGGACATGGTTGCTGGAGTTCTGTTCCAAAACTTGCAGGCCTGCAAAGGTGTGGGAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCTCTCATTATTGAACTCCACAGCATTTTAGGGAACAGGTGGGCTCAGATAGCGAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGCTATTATTCCTCCTTTAGCCACATTTTCTGATTTTCACACCCCCAGCACCACCAACATTGCTTCCATGGAAACTTTCTTCCCTTTTTCTGCAAACCCTAATCTCATCTTAAACTTCCACCATTACACAGACCAGTTCTACCTTCCCCCCACACCATCCCCATTTTTTGATCATAACAGCAATGATATGAAGTTAGCTTTCAACACTTACAATGCCAATTTCCTTCATATTCAGAATCCAGCAGCAGTAGCAGAAACAGCACTACCATGTTCCAATCAAATCACCAAAAGTGACACTGTTCTTGACAAATTCATCAACCCAACAGCATTGCAGGAACACGAATACCAGTTGGTAGAAGAGCCCGAACCCCTTGTGCCAATAACGAGTGAGAACATTGAGGATTATGTTTGCAGCAGCAATTATCCACAAGAACAACACGAGGCTACAACAAAATTTCAGTGTTATCCACAAGATCTAGCTGTGGCAGTGAACCAGTTAGAGTACATTGATGCGTTCATGTCATTGTTGCCATCTTCAACAACTTCATCGTCATCAGTTTCAAGCACCCAAAAAGTCCCAAACCCTATTATTCCCTCAGGATGGGAGCCTTGA 972 0.427 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDAIIPPLATFSDFHTPSTTNIASMETFFPFSANPNLILNFHHYTDQFYLPPTPSPFFDHNSNDMKLAFNTYNANFLHIQNPAAVAETALPCSNQITKSDTVLDKFINPTALQEHEYQLVEEPEPLVPITSENIEDYVCSSNYPQEQHEATTKFQCYPQDLAVAVNQLEYIDAFMSLLPSSTTSSSSVSSTQKVPNPIIPSGWEP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02506 323 Gene3D - 69 116 - -
Viun10g02506 323 SMART sant 66 114 IPR001005 -
Viun10g02506 323 SMART sant 13 63 IPR001005 -
Viun10g02506 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun10g02506 323 CDD SANT 17 61 IPR001005 -
Viun10g02506 323 PANTHER MYB DOMAIN PROTEIN 55 1 239 - -
Viun10g02506 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun10g02506 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun10g02506 323 FunFam MYB transcription factor 6 66 - -
Viun10g02506 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun10g02506 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun10g02506 323 MobiDBLite consensus disorder prediction 300 323 - -
Viun10g02506 323 CDD SANT 69 109 IPR001005 -
Viun10g02506 323 Gene3D - 11 67 - -
Viun10g02506 323 MobiDBLite consensus disorder prediction 300 315 - -
Viun10g02506 323 FunFam Myb transcription factor 69 116 - -
Viun10g02506 323 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Viun10g02506 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02506 Viun-Chr10 39073033 39074843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02506 1 118 MYB Transcription Factor Family AT3G13890 96.610 1.64e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g02506 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02506 K09422 - gmx:100785147 471.855