Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02500 ATGACTTACTTTGGTATCAACATAGCGGATTTCTCATGGACTTGTCTGAGAGATTTTGATTTCACTTCTTTGTGCTCCCAAACCAGCATTATAGACATTTTAAAAGTACTTTTCCTCGGTGTCTTCTACACGTCTTTGGTTATTTCATTAATCAGAGGAAGTTCAGCATGTGGTAGCAACAGAAAAAACTGGGTTTTCCTAGTTGTCTCAATCTGTTGTGCTCTCATTAGCATTGCACATTTCAGCAATGGCTTGAGGTTGTGGAATCGGAAGAGCTTGTTGGCTTGTATTTTCAGAGCATTTATGTGGCTTTCTTTTACAGTTTCATTGCATGCTCAGAGAAACAAATGGATCAAAATTCTGAACTCTATCTGGTGGACATCTTCCTGTGTACTTGCTTCAACTCTCAACATTGAAATCATGTTCAAAGGGTACACAATTCAACTGTTTGAAATGATACAATGGCTTGTACATTTCTTACTTCTCTTTTGCTCCTTCCAAAATCTCGGTTGTTTTGTGGCGTCCCAAAGTAAACAAGAAGACACTGCAAGTTTATCTCAGCCTCTGATTGCTCAGAAAGTTGAAACTACACAAACACAACTAGGGCGTGCTACCCTTCTCAGTAAGTTAACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCCACTAGCTCTTGAAGATATCCCATTTCTTCTTCCTGAAGATGAAGCGAACTTGGCCTACCAAGCTTTTATGCATGCATGGGAATCCCTTCTAAGGGAGACCAGCAATAACAACAACAACAAAAACTTGGTTCTTTGGTCTGTAGCTAGAACCTTCTCCAAGGAGAACATATTAATAGCATTTTATGCATTACTCAGAAGTATTTGCATGATAATTTCTCCTCTAATACTATATGCTTTTGTAAACTACACAAATAGCACTGAGGCAGATCTCAAACAAGGTTTTTCCATACTGGGATTTATGGTTCTAAGCAAAGTGGTTGAGTCTCTGTGTCAAAGACATTACGCTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTACCAGAAACTGCTAAAGCTTTCAAGCTCAGCAAGGACAAGGCACTCAACTGGAGAAGTTGTGAATTACATTGCAGTTGATGCATATCGATTGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACTTCTGCAGTTCAACTTGTTTTGTCCATCATTATCCTTTTCAGTGTTGTGGGTGTCGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAATGTACCATTTGCAAAGATCATACACAGTTGTCAGTCACAATTCATGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAGTAGTATGAAAATCATCAAGTTACAATCCTGGGAAGATAAATTCAAGAACTTAGTTTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGACCAAGATACAGATCATCAAAGCTAATGGATCATTTCTATATTGGATGAATCCCACCATTGTTCCTACTGTTGTTTTCCTCGGGTGTGCTCTTTTCAAAAGTGCCCCGCTGAATGCTGGAACCATTTTCACAGTTATAACATCATTGAGGGTAATGGGAGAACCTGTTCGAATGATTCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAACTAGTACTAACGGTTATGGAAGAAATATAAAGCAAAGTTCAGTTAATGCAGTGGAAATCCAGGAAGGCAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGAGGTGAAGCTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCTCTTTTGTATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTTGGTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAACCAGATACGAGAATGTCACTAAAGTTTGTGCCTTAGATATGGATATTAATGATTTTAGCCATGGTGATCTTACCGAAATAGGGCAGCGAGGCATTAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGACATCTATCTTCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCTGCAATTTTGTTCCATGACTGTGTCGTGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCACAGAAGTTGATACGATCCTGGTAATGGAGGATGGAAAAGTTACTCAATCAGGTAGTTATGAAGATCTCCAGTCAGCTGGCACTGCCTTTGAACAGCTTGTGAGTGCCCATAAAGCTGCATTAACAGGATTGGATAAGAAATATGAAAATAGTAGTGATTCTGATATTGAATTTATGGTACATCCTGAAGAATCTCAAAGTTTTAATCTCACTAAAAATCAAAGTGAGCAAGTGATTTCTACCAAGGGACAACTTGGGGCACAACTTACACAAGAAGAAGAAAAACTGACTGGTGATGTTGGGTGGAAACAATTCTGGGACTATATTTCATTTTCAAGGAGCTCATTCGTGTTTTTCTTAACCATGTTAGCAGAATTTGCTTTTATTGCTTTGCAGACTGCATCATCATATTGGCTTGCTCTAGCTTTTGAAATTCCAAAAGTAACCAGTGGCCTTTTGATAGGAGTTTATGCATCATTTTCATTTCTCAGTGCTATATTTATATATATAAGGTCTTTCCTAGCTGCTTATCTTGGATTAAAAGCTTCTGAAGCCTTCTTCTCAAGTTTTACATCAGCTATCTTCAATGCTCCGATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTTTGGACATTGATATTCCTTATACTCTCACTTTAGTAGCATTTGTAGCAGCTGAAATTCTAGTGACAATATGTGTAATGGTATCAATCACATGGCAAGTTCTTATTGTTGCTGTTCCAGCTACAGTGGCATCAATATACATTCAGGGATATCATCAAGCCTCTTCAAGAGAATTGATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCTGCCGAGACATCACTTGGGGTGGTTACTATAAGAGCAATGAACATGGTGAACAGATTTTTCAGCAACTACCTAAAGCTTGTGGACATGGATGCAGCAGTGTTCTTTCACTCTAATGTGGCCACGGAATGGTCAATTTTAAGGATTGAATTACTTCAAAACTTGACAGTATTCACAGCAGCTGCATTACTTATTCTACTTCCCAGGGAATCTGTATCACCAGGTCTTGTGGGACTGTCTCTTTCTTATGCGTTGACATTGAAAGAATCCCAAGTATTTTGTAGTAGAATGTATAGCATGTTGTCAGACCATATCATCTCTGTTGAAAGAATCAAGCAATTCATTCACATTCCATCAGAGCCTCCTGCCTTTGTGGAAGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATCGATCTTAAAGCCCTAGAGATTAGATATCGTCCAAATGCTCAATTAGTTCTCAAGGGTATAAATTGCACGTTTGTAGAAGGGAGTAGAGTGGGAGTTGTTGGGAGGACTGGAAGTGGCAAAACTACACTTATCAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTGATGGGGTTAAAGGATTTGAGAACAAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCTTCTATGAAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCAGCAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGAAATTGGAGTTTGGGACAGCGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAGGAACAGAATACTTGTCCTAGATGAAGCTACTGCGTCTATTGACTCTGCAACAGATACCATTCTACAACAAGTGATAAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGACGAGCCTTCAAAACTTATGGCGACCAACTCTTGGTTCTCTAATTTGGTTGCTGAGTATTGGTCAAGCTGCAGGAAGAACTCATCGCCTAATATTAGCAGGAAGCAACATTGA 4410 0.3975 MTYFGINIADFSWTCLRDFDFTSLCSQTSIIDILKVLFLGVFYTSLVISLIRGSSACGSNRKNWVFLVVSICCALISIAHFSNGLRLWNRKSLLACIFRAFMWLSFTVSLHAQRNKWIKILNSIWWTSSCVLASTLNIEIMFKGYTIQLFEMIQWLVHFLLLFCSFQNLGCFVASQSKQEDTASLSQPLIAQKVETTQTQLGRATLLSKLTFSWVNSLLRLGYSKPLALEDIPFLLPEDEANLAYQAFMHAWESLLRETSNNNNNKNLVLWSVARTFSKENILIAFYALLRSICMIISPLILYAFVNYTNSTEADLKQGFSILGFMVLSKVVESLCQRHYAFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVVNYIAVDAYRLGEFPWWFHIAWTSAVQLVLSIIILFSVVGVGALPGLVPLLICGLLNVPFAKIIHSCQSQFMMAQDERLRSTSEILSSMKIIKLQSWEDKFKNLVLSLRAKEFKWLTKIQIIKANGSFLYWMNPTIVPTVVFLGCALFKSAPLNAGTIFTVITSLRVMGEPVRMIPEALSIMIQVKVSFDRLNTFLLDEELTSTNGYGRNIKQSSVNAVEIQEGNFIWDHESVSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENVTKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVVTALREKTVILVTHQVEFLTEVDTILVMEDGKVTQSGSYEDLQSAGTAFEQLVSAHKAALTGLDKKYENSSDSDIEFMVHPEESQSFNLTKNQSEQVISTKGQLGAQLTQEEEKLTGDVGWKQFWDYISFSRSSFVFFLTMLAEFAFIALQTASSYWLALAFEIPKVTSGLLIGVYASFSFLSAIFIYIRSFLAAYLGLKASEAFFSSFTSAIFNAPMLFFDSTPVGRILTRASSDLSILDIDIPYTLTLVAFVAAEILVTICVMVSITWQVLIVAVPATVASIYIQGYHQASSRELMRINGTTKAPVMNFAAETSLGVVTIRAMNMVNRFFSNYLKLVDMDAAVFFHSNVATEWSILRIELLQNLTVFTAAALLILLPRESVSPGLVGLSLSYALTLKESQVFCSRMYSMLSDHIISVERIKQFIHIPSEPPAFVEDNRPPSSWPSKGRIDLKALEIRYRPNAQLVLKGINCTFVEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGFYEDDEIWKALEKCQLKETISKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDTILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMATNSWFSNLVAEYWSSCRKNSSPNISRKQH 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02500 1469 ProSitePatterns ABC transporters family signature. 723 737 IPR017871 GO:0005524|GO:0016887
Viun10g02500 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1453 - -
Viun10g02500 1469 CDD ABC_6TM_ABCC_D2 905 1192 IPR044726 GO:0140359
Viun10g02500 1469 FunFam ABC transporter C family member 5 866 1198 - -
Viun10g02500 1469 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Viun10g02500 1469 Gene3D - 1200 1451 IPR027417 -
Viun10g02500 1469 SUPERFAMILY ABC transporter transmembrane region 270 575 IPR036640 GO:0005524|GO:0016020
Viun10g02500 1469 FunFam ABC transporter C family member 3 1200 1451 - -
Viun10g02500 1469 Pfam ABC transporter 616 750 IPR003439 GO:0005524
Viun10g02500 1469 CDD ABCC_MRP_domain2 1215 1435 - -
Viun10g02500 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Viun10g02500 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Viun10g02500 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02500 1469 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Viun10g02500 1469 SUPERFAMILY ABC transporter transmembrane region 890 1199 IPR036640 GO:0005524|GO:0016020
Viun10g02500 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 821 IPR003439 GO:0005524
Viun10g02500 1469 FunFam Multidrug resistance protein associated1 576 841 - -
Viun10g02500 1469 CDD ABCC_MRP_domain1 598 798 - -
Viun10g02500 1469 Gene3D ABC transporter type 1, transmembrane domain 867 1198 IPR036640 GO:0005524|GO:0016020
Viun10g02500 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02500 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 820 IPR027417 -
Viun10g02500 1469 Gene3D - 573 842 IPR027417 -
Viun10g02500 1469 SMART AAA_5 1243 1435 IPR003593 GO:0016887
Viun10g02500 1469 SMART AAA_5 625 798 IPR003593 GO:0016887
Viun10g02500 1469 Pfam ABC transporter transmembrane region 901 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02500 1469 Pfam ABC transporter transmembrane region 282 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02500 1469 Gene3D ABC transporter type 1, transmembrane domain 269 572 IPR036640 GO:0005524|GO:0016020
Viun10g02500 1469 FunFam ABC transporter C family member 10 265 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02500 Viun-Chr10 39008316 39014828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02500 598 831 Calmodulin-binding Proteins AT2G36910 26.772 5.97e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02500 - - gmx:100804798 2492.61