Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02496 ATGACACGGGGGAGGATAAGGGCGAGGCTCCGGAGGAGCAATCTTTACACATTTGGTTGCCTTAAGCCTTCTACTCTTGAGGATGCACCTCATCCACTTCAAGGTCCCGGGTTTTCGCGTACTGTGTATTGCAATCAGCCTCTTCTTCATGAAAGGAAGCCTCTATATTACTGCAGGAATGATATATCCACGACTAAGTACAATGTTCTTACGTTTGTCCCCAAGGCACTCTTTGAACAATTCCGTAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGTCTCTCGGCCTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTCAGTATGGCAAAGGAAGCATTGGAAGATTCTCGTAGGTTCGTTCAGGATGTCAAAGTTAATCGCCGAAAGGTTAATCGTCATAAAAGCGAGGGTAGTTTTAGTCCCAGGTCGTGGCAGACCATTATGGTTGGGGATGTGGTAAAAGTGCAAAAGGATCAATTTTTTCCAGCTGATTTGCTTCTGCTGTCATCGAGTTATGAGGATGGTATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACAAACTTGAAGGTGAAACGATCTTTGGAGTCTACCTTGAATCTAGACAATGACGAAGTTTTTAAAGATTTCACTGGAACAATACGTTGTGAAGACCCAAACCCGAATCTTTATACATTTGTTGGAAACTTAGAGTATGAGCGCCAGATTTATCCTCTTGATCCTAGTCAAATTCTTCTCCGAGATTCTAAGCTCAGGAACACTGAGTACATCTATGGGGTGGCCATTTTCACTGGTCATGACAGCAAAGTCATGCAAAATTCTACAAAATCTCCTTCCAAACGAAGCACAATAGAAAAGAAGATGGATTATATTATATACACCCTCTTCACTGTCCTTATTTTGATATCTGTTATTAGTTCCATAGGATTTGTCATCAAGACTAAGTACCAAACCCCAAGTTGGTGGTATTTAAGGCCGGACAATATAGAATACCAGTATGATCCCAACAAAATTGGAGTAGCTGGAATGAGTCATCTGATTACTGCGCTCATTCTTTATGGATATTTGATACCCATTTCACTTTATGTTTCCATCGAGGTAGTAAAGGTTTTACAGGCTACCTTCATCAACCAAGACATTCAAATGTATGATGACGATACTGGAACTCCGGCTGATGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTAGATACTATCTTGTCAGATAAAACTGGAACTTTGACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTATTGCATATGGTGTGCGTCCCAGTGATGTTGAACTTGCTGCTGCAAAGCAGATGGCTTCTGATACTGAGGAACCTGATTCAGATCTTTCCAATTTTCCCCTGCCTAAGGCGAAAGTGCGAGTTTCATGGGATGATGTTAAAAAAGATGAAGAAATTGGACTGGAGGCTGTTGTTACTTCCAAAGGAGACGAGGATCAAAAGCATGCCATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATTGTAATTGGTTGAAAGAGCCCAATGCTGACGACCTTTTGATGTTCTTCCGAATCCTAGCAGTTTGCCACACTGCCATTCCTGAACTGAATGAGGAGACCGGTGTTTATACGTATGAAGCCGAGTCACCCGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGCAGAAGGACTCAATCAAGTATTTTTGTACGTGAAAAGTTTTCTGCTTCTAGACAAGTGGTTGAAAGAGAGTACAAACTTTTGAATCTGCTGGATTTTACTAGTAAAAGAAAACGTATGTCAGTGATCGTGCGTGATGAGGAGGGCACTGTCTTTCTTATGTGCAAAGGGGCTGACAGTATCATATTTGATCGAATGTCAAAGAATGGAAAAAAGTATTTAGAGGCTACTACCAAGCATCTAAATGAGTACGGAGAAGCTGGTTTGAGAACACTCGCCCTGGCTTATAGAAAGCTTGAGGAGCAAGAATTCTCGGCTTGGAACAATGAATTTCAGAAAGCCAAAGCATCTGTTGGGGCTGAAAGAGATTCAATGCTTGAGCGAGTATCAGATATGATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTTCCCCAATGTATTGATAATCTTGCTCAAGCTGGTCTTAAGATCTGGGTGTTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACTCCGGTCACAGATTCTGTAACCAGTGATGTCAAACAGGCCATCAAGGATAACATTGCGAACCAACTCACCAATGCTTCCCAAATGATAAAACTGGAGAAGGATCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATATACTTTAGAAGATGATATGAAGCTCCAATTTTTGGCATTGGCGGTTGATTGTGCATCTGTCATCTGTTGTCGTGTGTCTCCCAAGCAAAAGGCACTGGTTACAAGATTAGTGAAACAAGGTTCTGGAAAGACTACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGGATGATTCAAGAAGCAGATATTGGCGTTGGAATCAGTGGGGTGGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTCTAGAGAGGCTTCTGGTAGTCCATGGACATTGGTGTTACAAGAGAATCGCACAAATGATATGTTATTTCTTCTACAAGAATATTGCATTTGGCCTCACCATCTTCTATTTTGAGGCTTTCACAGGCTTCTCTGGTCAATCAGTTTATGATGACTGGTATATGATATTGTTCAATGTTGTTCTGACATCATTACCTGTTATTTCACTCGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAACAAGGACCCAGGAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATTCCTCACTCATCATCTTCTTTCTCGTGGTCACCATCTTCTACGACCAAGCATTTCGTAGTGATGGCCAGATAGCTGACATGGCTGTTGTTGGGACCACTATGTTCACTTGCATAGTCTGTGCTGTCAACTGTCAGATTGCGTTGACAATGAGCCACTTTACATGGATTCAGCACCTGTTTGTATGGGGAAGCATATCCACTTGGTACATCTTTCTCATATTGTATGGAATGCTTACTCCAGAATTATCCAAGAGTGCCTACCAAATACTGGCCGAAGCTCTTGGTCCTGCGCCTAATTATTGGATAACAACCATTTTAGCTACAGTTGCTTGTAATCTTCCTTATTTTGTCCACATTTCCTACCAAAGATGTTTTTATCCCATGGATCATCACATTATCCAAGAAATTAAGTACTACAAGAAGGATATTGAAGACCAACACATGTGGACAAGGGAGCGTTCTAAAGCCAGACAGGAAACCAAGATTGGTTTCACCGCAAGAGTGGAAGCAAAGATCAGGCAACTGAAGGGAAGGCTGCAAAAGAAGCAAGCTTCCATAGCTATTTCAGCCCCATCCCCATCGTGA 3681 0.4203 MTRGRIRARLRRSNLYTFGCLKPSTLEDAPHPLQGPGFSRTVYCNQPLLHERKPLYYCRNDISTTKYNVLTFVPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNRHKSEGSFSPRSWQTIMVGDVVKVQKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLNLDNDEVFKDFTGTIRCEDPNPNLYTFVGNLEYERQIYPLDPSQILLRDSKLRNTEYIYGVAIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFVIKTKYQTPSWWYLRPDNIEYQYDPNKIGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDDTGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGIAYGVRPSDVELAAAKQMASDTEEPDSDLSNFPLPKAKVRVSWDDVKKDEEIGLEAVVTSKGDEDQKHAIKGFGFEDDRLMNCNWLKEPNADDLLMFFRILAVCHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFVREKFSASRQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGTVFLMCKGADSIIFDRMSKNGKKYLEATTKHLNEYGEAGLRTLALAYRKLEEQEFSAWNNEFQKAKASVGAERDSMLERVSDMMEKELILVGATAVEDKLQKGVPQCIDNLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITTPVTDSVTSDVKQAIKDNIANQLTNASQMIKLEKDPHAAFALIIDGKTLTYTLEDDMKLQFLALAVDCASVICCRVSPKQKALVTRLVKQGSGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLVVTIFYDQAFRSDGQIADMAVVGTTMFTCIVCAVNCQIALTMSHFTWIQHLFVWGSISTWYIFLILYGMLTPELSKSAYQILAEALGPAPNYWITTILATVACNLPYFVHISYQRCFYPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQASIAISAPSPS 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02496 1226 CDD P-type_ATPase_APLT_Dnf-like 59 1041 - -
Viun10g02496 1226 SFLD Haloacid Dehalogenase 405 932 - -
Viun10g02496 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1158 IPR023298 -
Viun10g02496 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1183 - -
Viun10g02496 1226 NCBIfam HAD-IC family P-type ATPase 852 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02496 1226 FunFam Phospholipid-transporting ATPase 591 722 - -
Viun10g02496 1226 Coils Coil 1197 1217 - -
Viun10g02496 1226 Pfam Cation transport ATPase (P-type) 546 651 - -
Viun10g02496 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1159 IPR032630 -
Viun10g02496 1226 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Viun10g02496 1226 SFLD p-type atpase 405 932 IPR044492 -
Viun10g02496 1226 Gene3D - 592 723 IPR023299 GO:0000166
Viun10g02496 1226 Gene3D - 434 469 IPR023299 GO:0000166
Viun10g02496 1226 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Viun10g02496 1226 Gene3D - 724 921 IPR023214 -
Viun10g02496 1226 SUPERFAMILY HAD-like 410 925 IPR036412 -
Viun10g02496 1226 FunFam Phospholipid-transporting ATPase 118 288 - -
Viun10g02496 1226 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Viun10g02496 1226 Gene3D - 113 288 - -
Viun10g02496 1226 FunFam Phospholipid-transporting ATPase 724 921 - -
Viun10g02496 1226 Gene3D - 419 433 IPR023214 -
Viun10g02496 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 519 685 IPR023299 GO:0000166
Viun10g02496 1226 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Viun10g02496 1226 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Viun10g02496 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02496 Viun-Chr10 38983144 38990091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02496 1 1219 Primary Pumps ATPases AT1G17500 74.262 0.0 1916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02496 K01530 - gmx:100819559 2276.13