Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02492 ATGGAAACTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGCAGCGGATCCTTCGGGGAGATCTATCTCGGAACTAATTTTCAGACGAATGAAGAAGTTGCGATTAAGCTTGAAAGTGTGAAAACCAAGCACCCTCAACTGTTGTATGAATCGAAGCTGTATAAAATTCTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTACGGTGTTGAAGGAGAGTACAATGTGCTCGTGATGGATTTACTTGGCCCGAGTCTTGAGGATTTGTTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGTGACATCAAGCCAGACAACTTCCTTATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCTCTACACATCAGCATATCCCATACAGAGAGAACAAAAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTGGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTACGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGCCGGTCACTGAGGTTTGATGACAAACCAGACTATGCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGTTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCACTGCCCCTGCCCGTGCCATTGGTCCTGCTGCTGGACCAAGTTCAGGCGTGCCACCACTAGCTGCAAATACTGATGGACAGGGTGGAGAGGATGGTAGGCACAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACCCTGTACCTTTTGCTAATGATGGCGTGTTATCGAGACAAAAGGGTCCAGCTATATATGACTCAACTCAACCTAAAGATGTTATGTTGTCAAGCTCTAATTTTTTCCGGCCAAGTGGATCAGCAAGGCGAGGTGCTGTCTCAGGCAGCCGAGAATCCCGTGATGTAGTTGTTGGCAGTGAGACTGAGGCTTCTCGTCCTCTGCCTCTGGATTCAAGTCAGGGAGTACTTCGTAAAATGTCTGTTCCTGGTGCTCAGAGAAGTTCAGCAATCACGTCTTCTGAGCACAACCGTACATCCTCTGGCAGAAACACATCGAATATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTACATTTCAATGAAGAGAGGGTACATTATTAG 1434 0.4338 METRVGNKFRLGRKIGSGSFGEIYLGTNFQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSATAPARAIGPAAGPSSGVPPLAANTDGQGGEDGRHNNWSSSDPTRRRNPVPFANDGVLSRQKGPAIYDSTQPKDVMLSSSNFFRPSGSARRGAVSGSRESRDVVVGSETEASRPLPLDSSQGVLRKMSVPGAQRSSAITSSEHNRTSSGRNTSNIKNLETTLRGIESLHFNEERVHY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02492 477 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Viun10g02492 477 FunFam Casein kinase I isoform delta-like 1 308 - -
Viun10g02492 477 CDD STKc_CK1_delta_epsilon 8 282 - -
Viun10g02492 477 MobiDBLite consensus disorder prediction 330 347 - -
Viun10g02492 477 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Viun10g02492 477 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02492 477 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02492 477 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02492 477 PANTHER CASEIN KINASE-RELATED 8 396 - -
Viun10g02492 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun10g02492 477 Gene3D Transferase(Phosphotransferase) domain 1 1 310 - -
Viun10g02492 477 MobiDBLite consensus disorder prediction 432 454 - -
Viun10g02492 477 FunFam Putative Casein kinase I 1 85 - -
Viun10g02492 477 MobiDBLite consensus disorder prediction 372 386 - -
Viun10g02492 477 MobiDBLite consensus disorder prediction 305 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02492 Viun-Chr10 38977731 38982071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02492 11 281 MAP Kinase Kinase Kinase AT5G50180 26.644 1.39e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Viun10g02492 Pkinase 7.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02492 K02218 - gmx:100787808 842.417