Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02488 ATGGGGAATCAGAAGCAGAAGTGGACGCAAGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCTCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCACCTCCTACTTCTGCCACCTCCTCCACCACCACCACCGCTCCTCAAAACGCCCCTCCTGCTCCTCTAAACGTACAGGCTGAGGTCGCTGCCCTTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCCCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGATCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATGAGGTTCCTCAAAATTTTAGAAGGGCACTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCTCCTCCGGGGCAAAATCACCTCCACCGAAACCAAAGGATGTCCGGCCACTGCAGCTACAACCACAACCAGAACGACAATCCCCAGCTTCTGTCATTACGGCATCTAATGAGACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCCGTAAAGGAGGCAGAAAAAATATCATTGTTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAGGACATATATGAACAATGTTCCCGTGGTGAAATCATCCTCTTGGCTTAA 882 0.4637 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPPPTSATSSTTTTAPQNAPPAPLNVQAEVAALDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHEVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSGAKSPPPKPKDVRPLQLQPQPERQSPASVITASNETIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02488 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Viun10g02488 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Viun10g02488 293 Pfam linker histone H1 and H5 family 125 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02488 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Viun10g02488 293 MobiDBLite consensus disorder prediction 54 105 - -
Viun10g02488 293 Gene3D - 2 58 - -
Viun10g02488 293 MobiDBLite consensus disorder prediction 191 224 - -
Viun10g02488 293 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Viun10g02488 293 FunFam Telomere repeat-binding factor 1 8 87 - -
Viun10g02488 293 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02488 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Viun10g02488 293 SMART sant 4 59 IPR001005 -
Viun10g02488 293 Gene3D - 120 206 IPR036388 -
Viun10g02488 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 123 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02488 293 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Viun10g02488 293 SUPERFAMILY "Winged helix" DNA-binding domain 123 203 IPR036390 -
Viun10g02488 293 CDD H15 125 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02488 293 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02488 Viun-Chr10 38961293 38964805 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02488 1 293 Single Myb Histone (SMH) Gene Family AT1G72740 47.797 1.10e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g02488 Linker_histone 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02488 K09422 - gmx:778177 412.92