Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02485 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAATATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGTTCCAAAGACAAACCTAGGGCTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCTGCCGCCACCACCGCTACACCTCAGAACGCGGCTTCTGCTCCACAAAACGCACCGTCAGATGCAGCTGTCCCGGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGCCCCCTCAGGAACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCAGCACCGTCACAACCTGCACCACAACCGCAGTGGCACTCCTCAGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAAGATGCTGCTGATACTGCAGCCTACAGAATTGCTGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAGCATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTACTGTAGATAAGCTATATTTCCTGCCTAAAATTTGTGATTATTTTGATTCTTATTGA 909 0.4455 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRAPKLKALPAPPSATTSAATTATPQNAASAPQNAPSDAAVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDAPSGTKSPSPKPKDVRPAPSQPAPQPQWHSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCTVDKLYFLPKICDYFDSY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02485 302 MobiDBLite consensus disorder prediction 55 122 - -
Viun10g02485 302 CDD H15 123 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02485 302 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Viun10g02485 302 FunFam Telomere repeat-binding factor 1 117 198 - -
Viun10g02485 302 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Viun10g02485 302 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Viun10g02485 302 FunFam Telomere repeat-binding factor 1 2 58 - -
Viun10g02485 302 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02485 302 MobiDBLite consensus disorder prediction 184 220 - -
Viun10g02485 302 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Viun10g02485 302 Gene3D - 2 58 - -
Viun10g02485 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Viun10g02485 302 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691
Viun10g02485 302 SMART sant 4 59 IPR001005 -
Viun10g02485 302 MobiDBLite consensus disorder prediction 82 120 - -
Viun10g02485 302 CDD SANT_TRF 6 56 - -
Viun10g02485 302 Gene3D - 118 208 IPR036388 -
Viun10g02485 302 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02485 302 Pfam linker histone H1 and H5 family 123 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02485 Viun-Chr10 38952255 38955200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02485 1 292 Single Myb Histone (SMH) Gene Family AT1G72740 46.575 2.40e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g02485 Linker_histone 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02485 K09422 - gmx:780537 405.216