Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02484 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAATATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGTTCCAAAGACAAACCTAGGGCTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCTGCCGCCACCACCGCTACACCTCAGAACGCGGCTTCTGCTCCACAAAACGCACCGTCAGATGCAGCTGTCCCGGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGAGCAAGCATCTGCCTCCTCCTATGCTCCTTCAATTTTGTTCTCTTATTTCGAAGTTGCTAAACTTGGACTCTATCTGTTCCTCTTCTTCCAATAGTACAAAATTGTTACAAAATAAAAAAAGATGCCCCCTCAGGAACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCAGCACCGTCACAACCTGCACCACAACCGCAGTGGCACTCCTCAGTTTCTGTCTTTACAGCATCTAA 780 0.4628 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRAPKLKALPAPPSATTSAATTATPQNAASAPQNAPSDAAVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKSKHLPPPMLLQFCSLISKLLNLDSICSSSSNSTKLLQNKKRCPLRNKITFTKTKGCPASTVTTCTTTAVALLSFCLYSI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02484 259 CDD H15 123 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02484 259 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02484 259 FunFam Telomere repeat-binding factor 1 2 58 - -
Viun10g02484 259 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Viun10g02484 259 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02484 259 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Viun10g02484 259 SUPERFAMILY "Winged helix" DNA-binding domain 122 183 IPR036390 -
Viun10g02484 259 Gene3D - 118 187 IPR036388 -
Viun10g02484 259 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 217 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02484 259 Gene3D - 2 58 - -
Viun10g02484 259 MobiDBLite consensus disorder prediction 53 122 - -
Viun10g02484 259 PANTHER SINGLE MYB HISTONE 4 1 184 IPR044597 GO:0003691
Viun10g02484 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Viun10g02484 259 SMART sant 4 59 IPR001005 -
Viun10g02484 259 MobiDBLite consensus disorder prediction 82 120 - -
Viun10g02484 259 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Viun10g02484 259 CDD SANT_TRF 6 56 - -
Viun10g02484 259 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02484 Viun-Chr10 38952255 38955200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02484 1 180 Single Myb Histone (SMH) Gene Family AT1G72740 55.000 2.68e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g02484 Linker_histone 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02484 K09422 - gmx:780537 267.7