Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02483 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAATATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGTTCCAAAGACAAACCTAGGGCTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCTGCCGCCACCACCGCTACACCTCAGAACGCGGCTTCTGCTCCACAAAACGCACCGTCAGATGCAGCTGTCCCGGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGCCCCCTCAGGAACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCAGCACCGTCACAACCTGCACCACAACCGCAGTGGCACTCCTCAGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAAGATGCTGCTGATACTGCAGCCTACAGAATTGCTGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAGCATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCTCGTGGTGAAATTATCCTTTTGGCTTAA 882 0.4546 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRAPKLKALPAPPSATTSAATTATPQNAASAPQNAPSDAAVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDAPSGTKSPSPKPKDVRPAPSQPAPQPQWHSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02483 293 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Viun10g02483 293 MobiDBLite consensus disorder prediction 184 221 - -
Viun10g02483 293 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Viun10g02483 293 CDD H15 123 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02483 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Viun10g02483 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Viun10g02483 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Viun10g02483 293 MobiDBLite consensus disorder prediction 54 122 - -
Viun10g02483 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02483 293 FunFam Telomere repeat-binding factor 1 117 198 - -
Viun10g02483 293 FunFam Telomere repeat-binding factor 1 8 87 - -
Viun10g02483 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Viun10g02483 293 SMART sant 4 59 IPR001005 -
Viun10g02483 293 MobiDBLite consensus disorder prediction 82 120 - -
Viun10g02483 293 Gene3D - 118 208 IPR036388 -
Viun10g02483 293 Pfam linker histone H1 and H5 family 123 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02483 293 Gene3D - 2 58 - -
Viun10g02483 293 CDD SANT_TRF 6 56 - -
Viun10g02483 293 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun10g02483 293 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02483 Viun-Chr10 38952255 38955472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02483 1 293 Single Myb Histone (SMH) Gene Family AT1G72740 48.123 1.28e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g02483 Linker_histone 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02483 K09422 - gmx:780537 419.468