Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02465 ATGTTTTCCAATACTCCAACAACTGTTGTGGTCGGAAGAGACTCCACCGTGATCGCAGTTAGCGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATTCTTCTTCATGTTCGAACTAAGACCATGCTTACACCTGAAAATAATAATGATGCACCCAAAAATGGACGTCCACCAAATGAAGAAGAATTGCACCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCCAGAAAAGGGATATCAACAAAGGAATTGGTCTTGCACGACCTTGATGTTACAAGTGCACTCATTGCTTTCGTTGTTGACAATTGTATAAGCACCCTTGTTGTTGGTGCTGCTACTTCTTCCTGGGGTTCTATTCTAAGGAGATTTAACAAAGATGATGTGTCAGCTAGTTTAGCAAAATCCTTACCAGACACATGCAGTTTATATGTTATCTCAAAAGGAAAAGTACAACATATTCGACCATCAGGTCCTATAAAAGACATAGTCAATTTCTTAGAAAGTGATCCATTGGATCAACCACACAAAGATCTCACCAATAACCAGATAGCTTTTGAAGATATAGAGAGGAAACTAATCAAAGATGTAGTGAAACACCAATCTAATAAACTTTGGGAATATTTACATGAAGAAACAAATTCACCAAAAAGTCCAATTGAGTACCCTTCATCACAAAATTCATCTGCAAATAATACTCCTGGAAATAGTGACAGCACGGGGCAAACACTTGGTCCTCCTTTGATTAATAAGTTACATGAAAACCAAAAAGTTGTGGTGAGCTTTGATATGCAAATGAGGAAATTGAAATTAGAACTACAAAAAACTGCAGAGATGTATGGTATGGCTTGCAAAGAAGCTGTTCTAGCTACACAGAAGGCAATGGAGATTGAAAAGTATAGGCAAGAGAAAGAACGTGATATGGAGGAAGCAAAGCTTGCTCAAACGAAAATGACTATGGAGTCCACACAAATGTCAAAACACTTGGTAAAAACGGAGTCTCAAAAGAGAAGGGAAGTTGAATTGAAATCCAAACATGAGGAAGGAGATACGATTAAAGCATTGCAGGAAGTTATATATAACAATATTCCCTACAGAAAATATACAATTGAAGATATTGATGCTGCAACAAATAAATTCGACAATGCTTTAAAAATTGGTGAAGGTGGATATGGTCCTGTCTTTAAAGGAGTTCTTGATCACACAACTGTTGCTATTAAGGCTGTGAAACCAGATTTAGCATATGCAGAAAAACAATTTCAACAGGAGGTCATTGTTTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCAGAGTTTGGGGTTCTTGTGTACGAGTATATGGTAAATGGAAGCTTAGAAGATCGTCTACTTCAAAGAGATAACAGTCCTCCAATCCCATGGAAAACGCGTTTCAAAATAGCATCTGAGATCGCCACCGGTCTTCTTTTTCTTCATCAGACAAAGCCAGAACCCTTGGTGCATCGGGACTTGAAACCAGCAAACATTCTCTTAGATAAGAACTATGTGAGCAAGATTAGTGATGTTGGTCTGGCACGACTTGTTCCTCCTTCGATGGCTAATCAAACCACACAATACCGTTTAACTGGTGCAGCTGGAACATTTTGTTATATCGATCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTGGTGTTGCTACAAATCATTACAGCAAAATCTCCAATGGGTTTGTCACACTTGGTTGAAAAGGCTCTTATGTCAAATACTTTAAGTGAGGTGCTTGATCCAAGTGTTAAAGACTGGCCAATAGAAGAAACTTCATCATTCGCTAAGTTGGCCTTAAAATGTTGCGAGTTAAGAAAACGTGATAGACCAGACCTTGGTACTGTTGTCTTACCAGAGTTAAACAAAATATCGAGGTTGTGGGACGATGAAAACATATATCCCTTAAGACATCACATGGCTTGA 2025 0.3881 MFSNTPTTVVVGRDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTKTMLTPENNNDAPKNGRPPNEEELHQFFLPFRGFCARKGISTKELVLHDLDVTSALIAFVVDNCISTLVVGAATSSWGSILRRFNKDDVSASLAKSLPDTCSLYVISKGKVQHIRPSGPIKDIVNFLESDPLDQPHKDLTNNQIAFEDIERKLIKDVVKHQSNKLWEYLHEETNSPKSPIEYPSSQNSSANNTPGNSDSTGQTLGPPLINKLHENQKVVVSFDMQMRKLKLELQKTAEMYGMACKEAVLATQKAMEIEKYRQEKERDMEEAKLAQTKMTMESTQMSKHLVKTESQKRREVELKSKHEEGDTIKALQEVIYNNIPYRKYTIEDIDAATNKFDNALKIGEGGYGPVFKGVLDHTTVAIKAVKPDLAYAEKQFQQEVIVLSTIRHPNMVLLLGACPEFGVLVYEYMVNGSLEDRLLQRDNSPPIPWKTRFKIASEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSMANQTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITAKSPMGLSHLVEKALMSNTLSEVLDPSVKDWPIEETSSFAKLALKCCELRKRDRPDLGTVVLPELNKISRLWDDENIYPLRHHMA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02465 674 SMART serkin_6 391 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02465 674 SUPERFAMILY Protein kinase-like (PK-like) 368 650 IPR011009 -
Viun10g02465 674 PANTHER OS02G0152300 PROTEIN 17 660 - -
Viun10g02465 674 Pfam Protein tyrosine and serine/threonine kinase 396 649 IPR001245 GO:0004672|GO:0006468
Viun10g02465 674 Gene3D Transferase(Phosphotransferase) domain 1 464 666 - -
Viun10g02465 674 MobiDBLite consensus disorder prediction 223 259 - -
Viun10g02465 674 CDD STK_N 15 160 - -
Viun10g02465 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Viun10g02465 674 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Viun10g02465 674 Coils Coil 305 328 - -
Viun10g02465 674 MobiDBLite consensus disorder prediction 328 348 - -
Viun10g02465 674 ProSiteProfiles Protein kinase domain profile. 391 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02465 674 FunFam Os07g0541700 protein 464 554 - -
Viun10g02465 674 MobiDBLite consensus disorder prediction 228 257 - -
Viun10g02465 674 Gene3D HUPs 15 157 IPR014729 -
Viun10g02465 674 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 364 463 - -
Viun10g02465 674 Gene3D Phosphorylase Kinase; domain 1 370 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02465 Viun-Chr10 38744620 38748587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02465 11 663 Receptor kinase-like Gene Family AT1G78940 42.324 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun10g02465 PK_Tyr_Ser-Thr 2.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02465 - - var:108320196 1194.87