Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02451 ATGGACTCGCGTACGTATAATCCACGCACAGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATCTGTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAACATGATCAACGAATTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAAAAGTCTTCTGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGCAACGAGCTCCAGAATCTCAGAGTAGACAGTCAAAGCCATCGCAACCAAAAGAAGAGGATGAAGAACTGGAGGAACAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCGTGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACCCCAGCTAGGGCAGAGCATATCAAACAATACAAGTGTCCCTCGTGCAGTAACAAGAGAGCTCGCCCCTGA 759 0.4506 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKQRAPESQSRQSKPSQPKEEDEELEEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02451 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Viun10g02451 252 PANTHER CPG BINDING PROTEIN 7 251 IPR045104 GO:0006355|GO:0042393
Viun10g02451 252 MobiDBLite consensus disorder prediction 144 192 - -
Viun10g02451 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Viun10g02451 252 SMART PHD_3 198 246 IPR001965 -
Viun10g02451 252 Pfam PHD-finger 199 248 IPR019787 -
Viun10g02451 252 CDD PHD_AL_plant 198 248 IPR044104 -
Viun10g02451 252 MobiDBLite consensus disorder prediction 149 174 - -
Viun10g02451 252 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Viun10g02451 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Viun10g02451 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Viun10g02451 252 FunFam PHD finger alfin-like protein 191 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02451 Viun-Chr10 38644237 38648994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02451 6 251 Alfin-like Transcription Factor Family AT3G42790 77.642 1.33e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun10g02451 Alfin 8.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02451 K26274 - gmx:100170700 475.707