Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02447 ATGAAGAACTTAATTGAGAAACGCTCTGGTTCTACCCATCCTTATGCCCTTGGATGCTCATCATGGGGGGCTTCCTCTGAATCTGATGTTCAGCAATCATCCATGTCCAGAGGTTTGACCTTGAAAATGGGTGTTCTGCCGCAGCAATGCCATAAGACTAAGCCATTGAATCTTCAATATCAAGACCGAGATTCTTCTTCATCTCAATCAACTGGTCAATCTTATCCAGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCAACACTTAACACAACTGGGAGAAAAAGTATGGAAGGAGTAATCAGATCATCTGTTCGGGGTCAGGATTTTACCTTCCCTCCTTCACAACTGTGTCACAACCGGCCACTTGCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGGCCACAACCTAATATTCATCCTGCACAACTCATAGGAATGGCTACTACTAGAATTCCTCTGCCACTTGATCTCAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGACAATACCGGGCAAAACTTGAAGCACAAAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATTTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGCTTCTTGAATACCAAGAAGCATGAAGAGTCTAAACCCTCTTCACAGAACCATGGCTTAGATGTTTCAAGCTGTACTCATTTGAAACTGAGGGGAAACATGTCAGAATCTAAGGCTCGTTTGAACTACAGAGATGGTGCTTTCACAACCACATGTTCAGATTTTACTACTGCATCCAATAGTGGTGATCTCTTCCAGCAACATCAACCAGACTTTAGATTATGTGGTTACCCTTCTCATCTCGGAAGGAACATGCAGGGTTACTCTGCTGATATCAGTGGTGGTCGTGGTGGTGGAAACCAGCATCGTCTATCAGTCCTTATGTGA 1029 0.4402 MKNLIEKRSGSTHPYALGCSSWGASSESDVQQSSMSRGLTLKMGVLPQQCHKTKPLNLQYQDRDSSSSQSTGQSYPEVGSAQSGQISVQCSNSSACSTLNTTGRKSMEGVIRSSVRGQDFTFPPSQLCHNRPLAHTAFHLAEPCFSGLLASPYGPQPNIHPAQLIGMATTRIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPSSQNHGLDVSSCTHLKLRGNMSESKARLNYRDGAFTTTCSDFTTASNSGDLFQQHQPDFRLCGYPSHLGRNMQGYSADISGGRGGGNQHRLSVLM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02447 342 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 Gene3D - 179 240 - -
Viun10g02447 342 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 36 284 IPR001289 GO:0003700|GO:0006355
Viun10g02447 342 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Viun10g02447 342 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02447 Viun-Chr10 38636467 38640754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02447 11 340 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.695 4.56e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun10g02447 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02447 K08064 - gmx:100500765 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02447 10 38636467 38640754 Viun10g02447 10 38636467 38640754 ECH
Viun5g03746 5 46278499 46280772 Viun10g02447 10 38636467 38640754 PCT