Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02436 ATGGATCTCTATCCTTGGTTTCTGATATTTGGAACACTGGCAATTTCTTTCACGTTCTTCACTTTCATCATGCTTGGATGGTGCTTGGATACCAATCACATACGATCCCTTCCTACAACAGCCTTATCTTTTGATGACAAATTCTCTCCTTGCAAGAGTTTGGAGTCTCATTCGATTACCTTCCATTACAAGGCTGCAGAAGGCACAAACCAGACTGAATGTGTTATCTGTTTGACAAGTTTTGAAGAAGAAGAAAGTGTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCTTTTGCATTGACAAGTGGCTTGGCTCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATCGATAAAGTGAGTTCCCTAAACAGTAGAATGTCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTCAACTCCTGA 435 0.4184 MDLYPWFLIFGTLAISFTFFTFIMLGWCLDTNHIRSLPTTALSFDDKFSPCKSLESHSITFHYKAAEGTNQTECVICLTSFEEEESVRKLHTCKHIFHTFCIDKWLGSHSGCPLCRTQIDKVSSLNSRMSLEENDHMIMVIVNS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02436 144 SUPERFAMILY RING/U-box 63 122 - -
Viun10g02436 144 Pfam Ring finger domain 73 116 IPR001841 -
Viun10g02436 144 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Viun10g02436 144 SMART ring_2 74 115 IPR001841 -
Viun10g02436 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 122 IPR013083 -
Viun10g02436 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02436 Viun-Chr10 38546113 38546547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02436 18 140 Rapid Response to Elicitors AT3G16720 34.959 1.21e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02436 - - gmx:102661636 267.7