Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02430 ATGACATATTCTAATTCTTTCCGAGTTTTTGATAGAATCAAACGTGTAATATTTGTTTGTGTCTTGCTGGCAGCGATAGACAATAATAATAGTAATAATTCTTCATATCCAGTGACAGATTTTGCTTATCACAATGACTCCCTTCAGATAAAGTACGATGTGTTTGTTAGCTTCAGAGGCACAGATATCCGGCAAGATTTCCTTAGCCATTTGATTGAGGCGTTTTCTCAAAGGCATATTAATGCGTTTGTAGATAACAAGATTGTCAAAGGAGATGTACTGTCTGAAGCACTTATTCGTGCAATTGAAGGATCATCAATTTCATTGATTATATTTTCACAGGACTATGCTTCTTCACACTGGTGTTTGTCAGAGCTTGTGAAAATTGTTGAGTGTAGAAGAACAAATGGCCAGATTGTATTACCTATCTTCTACAAAGTGGATCCTTCACATGTACGATATCAGAAAGGGTCTTACGAACATGCCTTCGCTAAACATCAAATAAGATATAGTTTGAGCACTATGCAAATCTGGAGAACTGCTTTGACTGAAGCTGCTAATCTATCAGGATTTCATTCATCAACATTTAGGGACGAAGCTGAGTTTATGAAAGAGATAGTTAAGTGCGTATTGATGAGGTTGAACCAAGTGCAACAAGTTAAATCCAGAGGACTTGTTGGAATTGGTAAACGAATTGCACATGTTGAATTACTGCTACAATCAGAAGAGCCTGATGTACGTATTATTGGAATATGGGGCATGGGTGGCATTGGTAAAACAACCATTGCAGAAGAAGTATATAACAAGTTGTGTTTTGAATATGAAGGTTGTTGTTTTTTGGCTAACATAAGAGAAGAATCGGGAAGACATGGAATAATGTCTTTGAAGAAAAAGCTTTTCTCAACATTATTAGGAGGAGAAGATTTGAAAATTGACACACCTAATGGATTGCCTCAATATATTGAGAGAAGGCTTCGACGTATGAAAGTTCTCATAATTCTTGATGATGTCAATGATTCAGATCAACTGGAAGTTTTAGCTGGAACACATGATTGGTTTGGATCAGGTAGCAGAATCATCATAACAACCAGAGATAAACAGGTACTTGCTAAAGAGTTTGCTAGTATATATAAGGTTGAGGCATTAAACTTTGATGAATCCTTAAGGCTTTTCAATTTGAATGCCTTTAAGCAAAATCATCTTGAAAGTGAGTACCATGAGCTTTCAAAGAAAGTGGTCAACTATGCCAAAGGGATTCCACTAGTTCTTAAAGTTTTGGGTCATCTTCTTCATGGAAAAGATAAGGAAACTTGGGAAAGCCAATTGGAAAGACTCAAAAAAGTGCAAAACAGAAAGGTCCATGATATGATTAAATTGAGTTACAATGATCTTGATCGGGATGAAAAGAAGATATTTTTAGATATTGCATGCTTTTTCGATGGACTGAATCTGAAGGTAAAGCATATAAATTTTTTATTGAAAGACCATGATTATTCAGTGGTTGCCGGATTAGAAAGGTTGAAGGATAAAGCTCTAATCACTGTTTCTCAAGAAAATGGTGTTTCAATGCACAACATTATACAAGAAACAGCTTGGCAGATTGCTCGAGAAGAATCAATTGAAGATCCCAGAAGCCAGATTCAACTATTGGATCCTGAGGACATTTATCATGTGCTAAACTATAATAAGGGTGACGAGGCTATCAGAAGCATAGTCATCAACTTGTCAAGAATCAAACAACTGCAATTAAACCCTCAAGTATTTGCAAGGATGAGCAAACTTCATTTTCTAGACTTTTATAGTAAAGGGTCTTGTAGTTGCCTCGGGGATCAAGGAGGCTTGTATCTTCCACAAGGACTTGAATCTTTATCAAATGAACTAAGATATCTTCGTTGGACCCATTATCCTTTGGAATCTTTGCCTTCAAAGTTTTCTGCTGAAAATCTTGTTGAATTGAACTTGCCACATAGCCGACTGAAAAAACTTTGGCAAGAAGCACCGGACCTTGTTAACTTGAGGGTCCTTATACTTCATTCATCAACAAGACTAAAGGAGCTACCAAACTTTTCAAAGGCCACAAACCTTAAAGCGATAGATCTCAGATTTTGTGTAGGGCTGACTAGTGTGCATTCATCAATTTTCTCTCTTAGAAATCTTGAGAAATTGGATCTGGGTGGCTGCATTTCCCTTAGAAGCCTACGAAGCAATGTCCATTTGGACTCCCTTCGTTATCTCTCCCTCTATGGATGCATGTCACTGAAGGATTTCTCAGTGACCTCAAAGAATATGGTAAAGTTGAATTTAGAACTCACTGGTATCAAGCAACTACCTTCATCATTTGGACTTCAAAGCAACCTCCAAAAGCTACGTTTGGCATACACTTACATTGACAACTTGCCAACAAGTATCAAGCATCTCACAAGGCTGCGACATCTTGATCTAAGATATTGCAGAGAGCTTAGAACTCTACCAGAGCTTCCACCATCACTTGAAACACTAGATGCCCGTGGATGTGTGTCACTTGAGAGTGTAATGTTCCCTTTTGCTGTTAGTGAACAACTGAAGGAAAATAAGAAAAGAGTTGCTTTCTGGAACTGCTTGAAATTGGATGAACCTTCTCTCAATGCTATTGAGTTGAATGCACAAATCAACATGATGAAATTTGCACATCAACATTTTTCCCTATTTGGGGATGCTCAAAGCACCTATGTATATCCTGGAAGTAAAGTTCCAAAATGGCTGGTGCATAAGACCACACATGATGACTTCGTGATTATGGATCTCTCTTCTGTTCTTTCTCCGCACTCCTCACACATAGGCTTCATTTTTGGCTTTGTTGTTCCGGAAGTCCCATTTGGGGGTTTGGCTTTGGAATTTAGGATTAGTACTGGTGGTGAAGGTGGCGAAGGTAGCCATATCAATGTGTACGTGGACAGACCACGACATGGTATCACATCGGATCATGTGTATCTAATGTATGACCAGGCATGTTCTCACTATCTAAACAGTCGTGCCAAACATGAGCCAAGGTTGAAAATTAAGGTTGCATTGGCATCGCGAACACTTACATCCAAGTACGTACCATTAGAGCTAAAAGCTTTTGGGATCAGCCTAATCAATACTACAGACTTTCTTAGTTTTGTTCAAAATGTCAAATTTGGTGACAATGTTCCAAATGTCCCTATTTTGCCAAAGTTTTTCTGTCCTTTCTGCATTGTTGTTTTTGTTGGGACTCTTAATATTTGTATCAGAAGATTGGTGTAG 3264 0.3802 MTYSNSFRVFDRIKRVIFVCVLLAAIDNNNSNNSSYPVTDFAYHNDSLQIKYDVFVSFRGTDIRQDFLSHLIEAFSQRHINAFVDNKIVKGDVLSEALIRAIEGSSISLIIFSQDYASSHWCLSELVKIVECRRTNGQIVLPIFYKVDPSHVRYQKGSYEHAFAKHQIRYSLSTMQIWRTALTEAANLSGFHSSTFRDEAEFMKEIVKCVLMRLNQVQQVKSRGLVGIGKRIAHVELLLQSEEPDVRIIGIWGMGGIGKTTIAEEVYNKLCFEYEGCCFLANIREESGRHGIMSLKKKLFSTLLGGEDLKIDTPNGLPQYIERRLRRMKVLIILDDVNDSDQLEVLAGTHDWFGSGSRIIITTRDKQVLAKEFASIYKVEALNFDESLRLFNLNAFKQNHLESEYHELSKKVVNYAKGIPLVLKVLGHLLHGKDKETWESQLERLKKVQNRKVHDMIKLSYNDLDRDEKKIFLDIACFFDGLNLKVKHINFLLKDHDYSVVAGLERLKDKALITVSQENGVSMHNIIQETAWQIAREESIEDPRSQIQLLDPEDIYHVLNYNKGDEAIRSIVINLSRIKQLQLNPQVFARMSKLHFLDFYSKGSCSCLGDQGGLYLPQGLESLSNELRYLRWTHYPLESLPSKFSAENLVELNLPHSRLKKLWQEAPDLVNLRVLILHSSTRLKELPNFSKATNLKAIDLRFCVGLTSVHSSIFSLRNLEKLDLGGCISLRSLRSNVHLDSLRYLSLYGCMSLKDFSVTSKNMVKLNLELTGIKQLPSSFGLQSNLQKLRLAYTYIDNLPTSIKHLTRLRHLDLRYCRELRTLPELPPSLETLDARGCVSLESVMFPFAVSEQLKENKKRVAFWNCLKLDEPSLNAIELNAQINMMKFAHQHFSLFGDAQSTYVYPGSKVPKWLVHKTTHDDFVIMDLSSVLSPHSSHIGFIFGFVVPEVPFGGLALEFRISTGGEGGEGSHINVYVDRPRHGITSDHVYLMYDQACSHYLNSRAKHEPRLKIKVALASRTLTSKYVPLELKAFGISLINTTDFLSFVQNVKFGDNVPNVPILPKFFCPFCIVVFVGTLNICIRRLV 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02430 1087 Pfam Leucine Rich Repeat 648 665 IPR011713 -
Viun10g02430 1087 SMART till_3 51 188 IPR000157 GO:0007165
Viun10g02430 1087 Pfam TIR domain 51 220 IPR000157 GO:0007165
Viun10g02430 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 191 IPR035897 -
Viun10g02430 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 475 IPR027417 -
Viun10g02430 1087 SUPERFAMILY L domain-like 571 855 - -
Viun10g02430 1087 Gene3D - 49 212 IPR035897 -
Viun10g02430 1087 Gene3D - 381 465 IPR042197 -
Viun10g02430 1087 ProSiteProfiles TIR domain profile. 50 214 IPR000157 GO:0007165
Viun10g02430 1087 FunFam Disease resistance protein (TIR-NBS-LRR class) 48 216 - -
Viun10g02430 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 52 840 IPR044974 GO:0006952
Viun10g02430 1087 Gene3D Ribonuclease Inhibitor 738 869 IPR032675 -
Viun10g02430 1087 Gene3D Ribonuclease Inhibitor 558 737 IPR032675 -
Viun10g02430 1087 Gene3D - 213 377 IPR027417 -
Viun10g02430 1087 SUPERFAMILY "Winged helix" DNA-binding domain 452 559 IPR036390 -
Viun10g02430 1087 PRINTS Disease resistance protein signature 804 820 - -
Viun10g02430 1087 PRINTS Disease resistance protein signature 416 430 - -
Viun10g02430 1087 PRINTS Disease resistance protein signature 324 338 - -
Viun10g02430 1087 PRINTS Disease resistance protein signature 248 263 - -
Viun10g02430 1087 Pfam NB-ARC domain 236 459 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02430 Viun-Chr10 38538531 38543560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02430 52 825 WRKY Transcription Factor Family AT4G12020 33.885 1.97e-110 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02430 - - gmx:100802823 1719.13