Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02428 ATGCAGTGTGTTGTAGTCAATCCAACAATGTCTTTCCAAGTTTCTCATAAAATCAAATATGTTGCATTCATGTGTCTAGTGTTTGTAACATCTTCAATTTGTTCCAATGACACTGCTCAAATAAAGTACGATGTATTTGTCAGCTTCAGAGGTGAAGATGTCCGTAGAGGTTTCCTCAGCCATTTGATTGAGCTATTTTCTCAGAAACAAATTGCTTTCTTCGTAGATGATGGCATCCCAAAAGGGGAAGAAATATCTGAAGCACTGTTTGGAGCAATTGAGGAATCATATATTTCTTTGGTTATATTTTCAGAAAACTATGCTTTTTCAAGATGGTGTTTGTCAGAACTTGAGAAAATTTTGGAGTGCAGGAGAAAAAATGGACAAACTGTAATGCCTATTTTCTACAAAGTTGACCCCTCAGACGTACGACATCAAAGGAGGACTTATGGAGATGCCTTTGTTAAACATGAAACAAAATATTCCTTGACTACTGTACAAACCTGGCGATCTGCTTTGAGTGAATCTGCTAATCTATCAGGATTTCATTTATCAAACTTTCGAGATGAAGCTGAACTTGTTAAAGGTATAGTTAAATTTGTCTGGAGGACGTTGAATCATGTTCACCACGTTAACTCCAAAGGGCTTGTTGGAATAGGTAAACGAATTGCAGATGTTGAATCATTGATGGAATTAGAAGCAACAGATGTTCGCATGATTGGAATATGGGGCATGGGTGGTATTGGTAAGACAACTATTGCACAAGAGGTATATGATAAAATGTGTTTTAAATATGATAGTTGTTGTTTTCTGGCTAACATAAGGGAGGAGTCAGGGAGACATGGAATGAACATTTTGAAGGAAAAGCTTTTTTCAAAATTATTAAGAGAAGAACATTTGAATATTGGCACACCTGATGGGTTCCAGAAGTTAGTCGAGAGAAGACTTCATCGTATGAAGGTTCTTATTGTTCTGGATGATGTCGATGACTCAGAGCAACTAGAAAAGTTAGCTAGAACAGATTGGTTTGGGTATGGCAGTAGAATCATTGTGACAACCAGAGATAAACAGGTGCTTGCTACGGAGTCTGCAAATGTATACCATGCTGAGGCCTTAAACTTTGATGAATCTCTGCGACTTTTCAATTTAAATGCCTTTAAGAAAAAACATGTAGAGGCAGAGTACGAGGAGCTGTCAAAGAAAGCAGTTGATTACGCCAAAGGCATTCCGCTTGTTCTTAAAGTTCTGGGTCACCGTCTTCATGGGAAAGATAAAGAGATATGGGAAAGTGAATTGGAAAGAGAAGGAGTGCACAACAAAAAGGTTCATGATATTATTAAATCGAGTTACTATGATCTTGAGGAGGATGAAAAGAGGATGTTTTTGGATATTGCATGTTTTTTTTACGGGCAGCAACTGCAGGTGAAGTACATAGATTTTTTATTGAAAGATCGTGATTATTCAGTGGTTGCGGGATTGGAAAGGTTGAAGGATAAGGCTTTAATCAGTATTTCTCAAGAAAATACTGTATCGATGCATGACATTATACGAGAAACCGCTTGGCAGATTGCTGGCCAAGAATCTATTGAAGACCCCAGAAGCCAGGTTCGACTATTTGATCCTGACGACATTTACAGAGTACTAACATACAACAAGGGTAACGAGGCTATCAGAAGCATAGTCGTGAACTTGTTGAGAATCAAACAACTACATTTAAAGCCACAAGTATTTACTAAGATGAGCAAGCTCCACTTTCTGAATATTTACACTGCAGGAACTCGCGATATTCGCTTCTATGAACCGTGGGGCTTGTATCTTCATCAAGGGCTTGAATCTCTGCCGAATGAGCTAAGATATCTTGGTTGGGCGCATTATCCTTTGGAATCTTTGCCTTCAAACTTTTCTGCAGAAAATCTAGTCGAGTTGCACTTGCCATATAGCCGGCTGAAAAAATTATGGCAAGAAGTGCCGGATCTTGTGAACTTAAGGGTTCTTATGCTGTATTCATCCTCAAACATAAAGGAGTTGCCAGATTTTTCAAAGGCCCCAAATCTTGAAGTAATAGATCTCCGTTCCTGTGTAGGGTTGACAAGTGTTCATCCATCAATTTTCTCTCTCAAAAAGCTTGAGATATTAGATTTGGAGGACTGCAGGTCCCTTACAAGCATTCGAAGCAATGTCCACATGGATTCCCTTCGTTACCTCTCCCTCTATAAATGCATGGAACTAAAGGATTTCTCAGTAACCTCAAAGAATATGATAATGGTGAATTTAGAACACACAAGTATCAAGCAACTCCCTTCATCTATGGGATCTCAAAGCAAGCTTGAAAAGATAAATCTAGCATTCAGTTACATTGAGAGCTTGCCTGCAAGCATGAAAGATCTTAAAGGTTTGCGACATCTCGATCTACGACATTGTAGGAATCTTAGCTCCCTACCAGAGCTCCCTCCATCAATTGAAACATTAGATGCCCGTGAATGCGTGTCATTGGAGAGTGTAACGTTCCCTTCTATCACCAAACAGTGGAATGAAAATAAGAAAAAGATTGTCTTTTGGAACTGCTTGAACTTGGATGAACGTTCTCTCAAGGCCATTGAGACGAATGCGCGAATTAACATGGTGAAATTTGCACACCGGCATTTGTCTACATCTGGTGATGCTCAAGCTATTTATGTGTACCCAGGAAGCCAAGTTCCAGAATGGTTGACGCATAAGACCACACTTTATGATGATGATGATGATGATGATGATTACATAAGTTTTGCTCCACATTCCTCTCACTCGGGTTACATTTTATGCTTCATTTTACCGGGAGTGCAGTATGCGGAAAGGGTTTTGAAATTGAAGGTGAGTACTGAAGGTGAAGGTGAAGATGAAGGTGACAGTACGATTGTGTACTTAGACAGACCACATCATAGTATTAAGTCGGATCACGTGTATCTGATGTACAACCAAGAATGTTCTCGCTTTCTAACCAGTCGTGCCAAACAACAACCAATGCTGAAAATTAAGGTTACAGTAGCATCACTAGGATTCTCATTCGAATACATACAAGTGCAGTTAAGAGGGTTTGGAGTCAGCACAATCAGCAATTTTCTTCAGAATCAACAATTGTGTGATGCTGCAAAGGAACATTGTGAAGTCTGTCCAGATGCTCTGTAG 3165 0.3934 MQCVVVNPTMSFQVSHKIKYVAFMCLVFVTSSICSNDTAQIKYDVFVSFRGEDVRRGFLSHLIELFSQKQIAFFVDDGIPKGEEISEALFGAIEESYISLVIFSENYAFSRWCLSELEKILECRRKNGQTVMPIFYKVDPSDVRHQRRTYGDAFVKHETKYSLTTVQTWRSALSESANLSGFHLSNFRDEAELVKGIVKFVWRTLNHVHHVNSKGLVGIGKRIADVESLMELEATDVRMIGIWGMGGIGKTTIAQEVYDKMCFKYDSCCFLANIREESGRHGMNILKEKLFSKLLREEHLNIGTPDGFQKLVERRLHRMKVLIVLDDVDDSEQLEKLARTDWFGYGSRIIVTTRDKQVLATESANVYHAEALNFDESLRLFNLNAFKKKHVEAEYEELSKKAVDYAKGIPLVLKVLGHRLHGKDKEIWESELEREGVHNKKVHDIIKSSYYDLEEDEKRMFLDIACFFYGQQLQVKYIDFLLKDRDYSVVAGLERLKDKALISISQENTVSMHDIIRETAWQIAGQESIEDPRSQVRLFDPDDIYRVLTYNKGNEAIRSIVVNLLRIKQLHLKPQVFTKMSKLHFLNIYTAGTRDIRFYEPWGLYLHQGLESLPNELRYLGWAHYPLESLPSNFSAENLVELHLPYSRLKKLWQEVPDLVNLRVLMLYSSSNIKELPDFSKAPNLEVIDLRSCVGLTSVHPSIFSLKKLEILDLEDCRSLTSIRSNVHMDSLRYLSLYKCMELKDFSVTSKNMIMVNLEHTSIKQLPSSMGSQSKLEKINLAFSYIESLPASMKDLKGLRHLDLRHCRNLSSLPELPPSIETLDARECVSLESVTFPSITKQWNENKKKIVFWNCLNLDERSLKAIETNARINMVKFAHRHLSTSGDAQAIYVYPGSQVPEWLTHKTTLYDDDDDDDDYISFAPHSSHSGYILCFILPGVQYAERVLKLKVSTEGEGEDEGDSTIVYLDRPHHSIKSDHVYLMYNQECSRFLTSRAKQQPMLKIKVTVASLGFSFEYIQVQLRGFGVSTISNFLQNQQLCDAAKEHCEVCPDAL 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02428 1054 Gene3D - 37 211 IPR035897 -
Viun10g02428 1054 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 207 - -
Viun10g02428 1054 Pfam TIR domain 42 215 IPR000157 GO:0007165
Viun10g02428 1054 PRINTS Disease resistance protein signature 315 329 - -
Viun10g02428 1054 PRINTS Disease resistance protein signature 406 420 - -
Viun10g02428 1054 PRINTS Disease resistance protein signature 704 720 - -
Viun10g02428 1054 PRINTS Disease resistance protein signature 239 254 - -
Viun10g02428 1054 Gene3D - 212 368 IPR027417 -
Viun10g02428 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 43 831 IPR044974 GO:0006952
Viun10g02428 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 464 IPR027417 -
Viun10g02428 1054 Gene3D Ribonuclease Inhibitor 751 884 IPR032675 -
Viun10g02428 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 37 182 IPR035897 -
Viun10g02428 1054 Gene3D Ribonuclease Inhibitor 546 750 IPR032675 -
Viun10g02428 1054 ProSiteProfiles TIR domain profile. 41 205 IPR000157 GO:0007165
Viun10g02428 1054 Pfam Leucine Rich Repeat 638 656 IPR011713 -
Viun10g02428 1054 SUPERFAMILY "Winged helix" DNA-binding domain 440 548 IPR036390 -
Viun10g02428 1054 Pfam NB-ARC domain 227 430 IPR002182 GO:0043531
Viun10g02428 1054 SUPERFAMILY L domain-like 561 858 - -
Viun10g02428 1054 Gene3D - 371 454 IPR042197 -
Viun10g02428 1054 SMART till_3 42 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02428 Viun-Chr10 38515477 38538432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02428 43 815 WRKY Transcription Factor Family AT4G12020 32.611 6.49e-105 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02428 - - pvu:PHAVU_010G131900g 1573.53