Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02418 ATGGGAAGAAGACCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAATGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACGAATCTGTCAAAGAAGTTACAGAAACATGGTACAGCAGCATTATCTGTTTCTTCAGTTGAACACAAACGTGATGAAGAAGAGAAGATCAAGCAAGTGCATGTAGCACCCGAAGCTCCACGCCCTAGGAGAGTTAGTGCAGTTGAATACAGTAAAATTGTGGAGAATGAAGGGTGTGGTGGTAATAGGTGTAGTACTACTACTCCCAGTCCCTCAAATAAAGTAGAGGGTAGTAGTGATGAAGCTTCTTTCAGTGATTTTCTGATCGATATTGATCAGAGCCAGTTGTTGATTGGAGATGATTCCAACTCAAAGGTCCCACAAATGGAGGAAGAACACAACAACAACAATAGCAAAGAGGTAGGGTTAAGCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCTTTTCTTGGACTTGAAAATGATTGA 828 0.4251 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISMDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTAALSVSSVEHKRDEEEKIKQVHVAPEAPRPRRVSAVEYSKIVENEGCGGNRCSTTTPSPSNKVEGSSDEASFSDFLIDIDQSQLLIGDDSNSKVPQMEEEHNNNNSKEVGLSNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02418 275 MobiDBLite consensus disorder prediction 168 188 - -
Viun10g02418 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Viun10g02418 275 FunFam MYB-related transcription factor 12 65 - -
Viun10g02418 275 Gene3D - 10 66 - -
Viun10g02418 275 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Viun10g02418 275 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun10g02418 275 MobiDBLite consensus disorder prediction 207 244 - -
Viun10g02418 275 CDD SANT 15 60 IPR001005 -
Viun10g02418 275 MobiDBLite consensus disorder prediction 226 243 - -
Viun10g02418 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Viun10g02418 275 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun10g02418 275 Gene3D - 69 142 - -
Viun10g02418 275 CDD SANT 72 111 IPR001005 -
Viun10g02418 275 SMART sant 65 113 IPR001005 -
Viun10g02418 275 SMART sant 12 62 IPR001005 -
Viun10g02418 275 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Viun10g02418 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Viun10g02418 275 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun10g02418 275 MobiDBLite consensus disorder prediction 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02418 Viun-Chr10 38454066 38455756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02418 1 159 MYB Transcription Factor Family AT4G09460 53.125 8.70e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g02418 Myb_DNA-binding 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02418 K09422 - gmx:547568 452.21