Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02417 ATGGGAAGAAGACCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGTGATGTCTGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAATGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACGAATCTGTCAAAGAAGTTACAGAAACATGGTACAGCAGCATTATCTGTTTCTTCAGTTGAACACAAACGTGATGAAGAAGAGAAGATCAAGCAAGTGCATGTAGCACCCGAAGCTCCACGCCCTAGGAGAGTTAGTGCAGTTGAATACAGTAAAATTGTGGAGAATGAAGGGTGTGGTGGTAATAGGTGTAGTACTACTACTCCCAGTCCCTCAAATAAAGTAGAGGGTAGTAGTGATGAAGCTTCTTTCAGTGATTTTCTGATCGATATTGATCAGAGCCAGTTGTTGATTGGAGATGATTCCAACTCAAAGGTCCCACAAATGGAGGAAGAACACAACAACAACAATAGCAAAGAGGTAGGGTTAAGCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCTTTTCTTGGACTTGAAAATGATTGA 840 0.4262 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAVMSAGLKRCGKSCRQRWLNYLKPGIKRGDISMDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTAALSVSSVEHKRDEEEKIKQVHVAPEAPRPRRVSAVEYSKIVENEGCGGNRCSTTTPSPSNKVEGSSDEASFSDFLIDIDQSQLLIGDDSNSKVPQMEEEHNNNNSKEVGLSNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02417 279 MobiDBLite consensus disorder prediction 172 192 - -
Viun10g02417 279 CDD SANT 15 64 IPR001005 -
Viun10g02417 279 SUPERFAMILY Homeodomain-like 11 111 IPR009057 -
Viun10g02417 279 Gene3D - 73 146 - -
Viun10g02417 279 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Viun10g02417 279 MobiDBLite consensus disorder prediction 211 248 - -
Viun10g02417 279 ProSiteProfiles Myb-like domain profile. 8 64 IPR001005 -
Viun10g02417 279 MobiDBLite consensus disorder prediction 230 247 - -
Viun10g02417 279 Gene3D - 7 70 - -
Viun10g02417 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Viun10g02417 279 CDD SANT 76 115 IPR001005 -
Viun10g02417 279 SMART sant 69 117 IPR001005 -
Viun10g02417 279 SMART sant 12 66 IPR001005 -
Viun10g02417 279 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Viun10g02417 279 FunFam MYB-related transcription factor 12 69 - -
Viun10g02417 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Viun10g02417 279 MobiDBLite consensus disorder prediction 170 193 - -
Viun10g02417 279 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Viun10g02417 279 Pfam Myb-like DNA-binding domain 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02417 Viun-Chr10 38454056 38455759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02417 1 163 MYB Transcription Factor Family AT4G09460 52.439 4.82e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g02417 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02417 K09422 - gmx:547568 446.432