Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02416 ATGGGAAGAAGTCCTTGTTGTTCTAAAGAAGGTTTGAACAAAGGAGCATGGACAGCTATGGAAGATAAAATTCTCACAGAATACATTAACATCCATGGCGAAGGAAAATGGAGACACCTTCCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGACTGAGATGGTTGAATTATCTAAGACCTGGCATTAAGAGAGGCAACATTACTAATGATGAAGAGGAGTTAATTATCAGGCTTCACAATCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAGAATGGCACACCAGGATACTCCATTACAGAGGGTGGTGCACGAAGCACTTTAAACACAGTTCAGGATGATCAAAATGTGAAGAACCAAGAATGGCACTACGATAAGGGTTCGTGTCTGGTTCAGACCAAAGCAACAAGGTGGAGTAAGGTCACAGTGAGTGACGAAATTAGTCAGCATAATGATGAAGACAATAAGAGCAATGTTGGTGATCATAACAAGATGAAGGCATTTCTGGTGTCTCCCCCATCTTCAGAGAGTAACTATGATCCAGTGTTGAATTTCATGGAAAATCTTGAGATGGATGGGAATTTCTTCTCGGAGTTGCTGAAGATGGATTTGCCTGAATCATCATCTTGTCAAGGAAACAAGATAGTTGAAGATAATGAGAACCCTAGTTCGGTTGATAAAGGGTATTTATCTCCAAAATCATCCTGTGAAACCACTCACTTTCATTGGGGTGATTCACTGTATGACCCAAATTTTGATTTTCTACCAGTGACAACTTTTACGGAGACCGGATTTGATTGGTTATGA 885 0.409 MGRSPCCSKEGLNKGAWTAMEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGYSITEGGARSTLNTVQDDQNVKNQEWHYDKGSCLVQTKATRWSKVTVSDEISQHNDEDNKSNVGDHNKMKAFLVSPPSSESNYDPVLNFMENLEMDGNFFSELLKMDLPESSSCQGNKIVEDNENPSSVDKGYLSPKSSCETTHFHWGDSLYDPNFDFLPVTTFTETGFDWL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02416 294 SMART sant 13 63 IPR001005 -
Viun10g02416 294 SMART sant 66 114 IPR001005 -
Viun10g02416 294 CDD SANT 16 61 IPR001005 -
Viun10g02416 294 Gene3D - 69 147 - -
Viun10g02416 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun10g02416 294 FunFam MYB-related transcription factor 13 66 - -
Viun10g02416 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 185 - -
Viun10g02416 294 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun10g02416 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun10g02416 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun10g02416 294 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Viun10g02416 294 CDD SANT 71 112 IPR001005 -
Viun10g02416 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun10g02416 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun10g02416 294 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02416 Viun-Chr10 38431238 38432581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02416 1 116 MYB Transcription Factor Family AT2G16720 75.862 6.81e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g02416 Myb_DNA-binding 9.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02416 K09422 - gmx:100809225 481.485