Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02413 ATGAATAACTGGTTGGGCTTCTCTCTCACTCCCCACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGCAGGAGCAGGAGGGTATCATCCTCCTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTCACCCACTCTGCTGCTACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGTTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAAGCAAATGGGTGTAATTTTCAATCACTGTCCCTCACTATGAGCCCCACTGTGCAGAATGGGGTGGGTGCAATTTCCTCTGTTCAAGCTCTTGAGGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGAAAATCTATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCTCATTTGTGGGATAACAGTTGCAGAAAGGAAGGACAGACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCTTCTGTGTATAGAGGTGTCACAAGGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCTGAAGCATACGACATCGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTACGATGTGAAGAGAATCTGCTCAAGTTCCACTCTCATTGCAGGAGATCTTGCAAAACGCTCCCCCAAAAAGGAATCACCACCTTCTGCTGCTGCGGATGACATCAACACAAGCAGTTCTTCTGTGCCGTCTCAGCCACCTCCTTTGGCAATAACTGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGTGATGAACAACAACAACAACAAGCACACAACGAGAGTGCTGCTAACATGAACAATGTCGCTGAATCATCATCATCACAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCCTGAAAGTCCTCCAAAGTGTTCTGTGGGGCTATCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGAAGGACCAAAATATGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1767 0.4533 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGAGAGGYHPPPSSHPHLSVMPLRSDGSLCVADSFTHSAATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALEDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPPSAAADDINTSSSSVPSQPPPLAITDAEHSDELSNMMWNANNSDEQQQQQAHNESAANMNNVAESSSSQQVSPSNNKVGLNPESPPKCSVGLSNEFGVSGADYGHGYFTLEGPKYDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02413 588 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Viun10g02413 588 Gene3D AP2/ERF domain 250 319 IPR036955 GO:0003700|GO:0006355
Viun10g02413 588 MobiDBLite consensus disorder prediction 432 466 - -
Viun10g02413 588 SUPERFAMILY DNA-binding domain 250 319 IPR016177 GO:0003677
Viun10g02413 588 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 CDD AP2 352 413 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 FunFam AP2-like ethylene-responsive transcription factor 352 413 - -
Viun10g02413 588 Pfam AP2 domain 352 403 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 Pfam AP2 domain 251 309 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 MobiDBLite consensus disorder prediction 484 523 - -
Viun10g02413 588 CDD AP2 250 319 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 MobiDBLite consensus disorder prediction 15 51 - -
Viun10g02413 588 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 501 - -
Viun10g02413 588 MobiDBLite consensus disorder prediction 445 461 - -
Viun10g02413 588 MobiDBLite consensus disorder prediction 15 29 - -
Viun10g02413 588 MobiDBLite consensus disorder prediction 484 527 - -
Viun10g02413 588 SUPERFAMILY DNA-binding domain 352 413 IPR016177 GO:0003677
Viun10g02413 588 FunFam AP2-like ethylene-responsive transcription factor ANT 250 319 - -
Viun10g02413 588 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 SMART rav1_2 251 323 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Viun10g02413 588 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02413 Viun-Chr10 38414127 38418057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02413 1 436 AP2-EREBP Transcription Factor Family AT1G72570 50.837 3.62e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun10g02413 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02413 K09285 - gmx:100805489 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02413 10 38414127 38418057 Viun10g02413 10 38414127 38418057 ECH