Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02411 ATGATGAGTGCAACTGCAACTGCAAGTGCCAGGAATAGGTCTCCTTTCACACCATCTCAGTGGCAAGAGCTTGAGCAACAGGCTCTTGTTTTCAAATACATGGTCACAGGAACACCTATCCCACCAGATCTCATCTACTCGATTAAAAGAAGTCTCGACTCTTCGATTTCTTCAAGACTCTTTCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCACCGCCACCAACACCTCCCAAACAATCCCATCCTATACCAGAAACCTTTCCTTGGCAAACCCCACCATAACTTCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGACTCCCAACCCTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTTTTCTATGCCCAATCAACCTCCTCTAGACCCCCAGATTCTGATTTTCCACCTCAAGATGCCACTACCCACCAGCTGTTCATGGACTCTGCTTCTTATTCTCATGATGAGAAGGATTACAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGAACAGCGAGGAACTACACTGACTCGTATCAACCACTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAGCTTTCAGAACATCAATGATGCCACCAACCAAAGACAGCAAGAGCAACAACACTGCTTTGTTCTGGGGACTGACTTCAAATCAACAAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAAGCCAGAGACCCCTTCATCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGATGAATGA 1029 0.4655 MMSATATASARNRSPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTTATNTSQTIPSYTRNLSLANPTITSPSFPFSPLPSSMPCDSQPFSQSYQNPSLNPFFYAQSTSSRPPDSDFPPQDATTHQLFMDSASYSHDEKDYRHVHGIREDVDERAFFPEASGTARNYTDSYQPLSMSSYKSYSNSSFQNINDATNQRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTDE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02411 342 PANTHER GROWTH-REGULATING FACTOR 5 14 330 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun10g02411 342 MobiDBLite consensus disorder prediction 297 311 - -
Viun10g02411 342 ProSiteProfiles QLQ domain profile. 15 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun10g02411 342 ProSiteProfiles WRC domain profile. 80 124 IPR014977 -
Viun10g02411 342 MobiDBLite consensus disorder prediction 110 144 - -
Viun10g02411 342 Pfam QLQ 15 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun10g02411 342 MobiDBLite consensus disorder prediction 121 144 - -
Viun10g02411 342 MobiDBLite consensus disorder prediction 328 342 - -
Viun10g02411 342 SMART QLQ_2 14 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun10g02411 342 MobiDBLite consensus disorder prediction 296 342 - -
Viun10g02411 342 MobiDBLite consensus disorder prediction 180 207 - -
Viun10g02411 342 Pfam WRC 81 123 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02411 Viun-Chr10 38386106 38388408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02411 1 123 GRF Transcription Factor Family AT3G13960 69.355 1.59e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun10g02411 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02411 - - gmx:100806024 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02411 10 38386106 38388408 Viun10g02411 10 38386106 38388408 ECH