Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02402 ATGATCATGGAACCAAATCCAACATCAGATCATAGTCTAGACTGGTTTGAAGCTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTGGACGAACCATATAACTCTTCTGACATCCAACTGTGGGAACAAGACATAAGCAGCCAGTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTAGCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTACTGATGATTCAAGTCTCAGACCACCACAGAACCACCACAAGTACAAGAAAATCAAGAGCAAAACAATGAATAGTGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAGAGGTACTGCTAAGGGTGTGGCAAATAACTGCAACAACAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAATCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGAGCCGCGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCATCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTCACACTCCACTTATCGTCTTCTCTAGCATCTACCTCTTCAGGGTCCATGACTTTTGCATCTACTGAGCCACGGTTCTTGCAGAAGACACTACTCAAGTTCTATGAGGTTAGTCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCACGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACGTTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTTGTCACTGCTTCTTCCAGTGAAATTGACACCCCATTTTCTATTGGTCCTCCCGGTGACAACTTCTCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCGTTGCATACACTGAGTGCTCAAAGTGTTGACACCTCCCCAGATGAAATCTTTGTTGTTTGTGCACAGTTTAGGTTGCATCAGTTAAGTCACAATAGCACTGATGAAAAGAGTGAAAAGAGTGAGTTTTTGAAAGTGCTGAGGAACATGGAGCCCAAAGGGGTGATACTGAGTGATAACAACATGGAATGTTGCTGCAATTGTTGTGGGGATTTTGCTACCGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACAAGCTCAGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCGGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAGGCCGGGTTTGTGGGGGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAATATGATAGTAATTGGGAGATGAAAGTTGAAGATGATAATAGAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCTCCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACGTCATGA 1635 0.4544 MIMEPNPTSDHSLDWFEASVSFFPLPPFLDEPYNSSDIQLWEQDISSQYQTDANTSSPNATNIATSTTPPEPCASNNLPLSDLPKKRSATTDDSSLRPPQNHHKYKKIKSKTMNSEADSGDAEGTTTVRKPGGNKRGTAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLSRVQHLLYVLHELASPTGDANHRLAAHGLKALTLHLSSSLASTSSGSMTFASTEPRFLQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSSEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKSEKSEFLKVLRNMEPKGVILSDNNMECCCNCCGDFATGFSRRVEYLWRFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDSNWEMKVEDDNRSVGLWWKGQPVSFCSLWKLDGNDQSSTFTS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02402 544 ProSiteProfiles GRAS family profile. 145 532 IPR005202 -
Viun10g02402 544 MobiDBLite consensus disorder prediction 49 75 - -
Viun10g02402 544 MobiDBLite consensus disorder prediction 49 143 - -
Viun10g02402 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 520 IPR005202 -
Viun10g02402 544 MobiDBLite consensus disorder prediction 86 100 - -
Viun10g02402 544 Pfam GRAS domain family 155 532 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02402 Viun-Chr10 38321676 38323663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02402 1 532 GRAS Transcription Factor Family AT3G13840 50.181 1.28e-167 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun10g02402 GRAS 9.4e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02402 - - vun:114166202 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02402 10 38321676 38323663 Viun10g02402 10 38321676 38323663 ECH
Viun10g02402 10 38321676 38323663 Viun5g03717 5 46166098 46168233 PCT