Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02398 ATGCCTTCAAAGAGGCTTCAATGGAGATCCTTAATACTAGGTTGTTTCAAGGCCAAGAACCAACCACCTTTGGATGCTCCAAACATAGTTTCGAAAAAGTCTTCATCAAGTAGAATCTTCCTCTCTGATTTAAGCCTCAGCGATTATTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTGGTGGGATCAAATCTGCGTATTTTCACCTACCAGGAGCTCAAGGAGATCACAAACAGCTTTAACAAATCCAACATTCTTGGGGAAGGTGGGTTTGGGAAAGTGTATAAAGGGTTTATCGATGACAGTTTTAAGCGTGGGTTGAAAGCTCAGGTTGTGGCAGTTAAAGCCTTAAACTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGTTGAAGCATCGCCATCTGGTTAACTTAATTGGCTATTGCTGCGAAGATGAACACAGGCTTCTTGTGTATGAATACATGGAGAGGGGAAATCTGGAGGAAAAACTTTTCAAAGGTTATGTAGCAGCCTTGCCATGGCTAACAAGAATCAAAATAGCACTTGGGGCAGCTAAGGGACTTATGTTTCTTCATGAAGAAGAAAAACCAGTCATATACAGAGATTTCAAGTCCTCAAACATTCTACTCGACGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGGCCAGAAAAAGATCAAACACACATTACAACTCGTGTTATGGGCACGCAAGGTTATGCAGCCCCTGAGTACATCATGACAGGCCATTTGACGACCATGAGTGATGTATATAGCTTTGGAGTTGTACTGTTAGAACTCCTCACAGGAAAGAAATCCGTGGACAAAAAACGACCCAGCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTCTGTTGAAAGATTCCTACAAACTGGAGAGAATAATGGACCCAAGACTTGAGGATCAATACTCAATTGAAGGGGCTAAAAAGTTTGCAGCTTTGGCTTACCAATGTCTGAGCCACCATGCAAAGGGTAGGCCCACCATGAGAACAGTGGTTCGAACCTTAGAGCCTCTCTTGAAACTGAAAGACATCCCAGTTGGCCCTTTTGTCTATGTGGTGCCCAATGAGGAAGACAAAGACATACCCAAAGTGAATGAAAAAGTAACAGAAAATGACCATGTTGTTGAGATCAACCAAATTGAGGAGTTAAAACCCAAAGAAGAAGAAAAGGCAGAGAAAAAAGAAAAGGGTCACCACCGGCAACGAAGAAGTCGTCGCCACAAACGCCGAGTTAAGCCCTTGAGGTCTCAACCTGTTTATTCTGACACTGCTCTGTACAAAACTCTTGGCACAAATCTTTACTCTCCCAAAGAAGCACAGTGA 1395 0.4315 MPSKRLQWRSLILGCFKAKNQPPLDAPNIVSKKSSSSRIFLSDLSLSDYSSLSIMSDLSNSLVGSNLRIFTYQELKEITNSFNKSNILGEGGFGKVYKGFIDDSFKRGLKAQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIALGAAKGLMFLHEEEKPVIYRDFKSSNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTQGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSYKLERIMDPRLEDQYSIEGAKKFAALAYQCLSHHAKGRPTMRTVVRTLEPLLKLKDIPVGPFVYVVPNEEDKDIPKVNEKVTENDHVVEINQIEELKPKEEEKAEKKEKGHHRQRRSRRHKRRVKPLRSQPVYSDTALYKTLGTNLYSPKEAQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02398 464 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 368 - -
Viun10g02398 464 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Viun10g02398 464 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Viun10g02398 464 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Viun10g02398 464 CDD STKc_IRAK 88 362 - -
Viun10g02398 464 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Viun10g02398 464 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02398 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Viun10g02398 464 MobiDBLite consensus disorder prediction 420 438 - -
Viun10g02398 464 MobiDBLite consensus disorder prediction 401 464 - -
Viun10g02398 464 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Viun10g02398 464 MobiDBLite consensus disorder prediction 401 419 - -
Viun10g02398 464 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Viun10g02398 464 PANTHER OS01G0588500 PROTEIN-RELATED 42 362 - -
Viun10g02398 464 MobiDBLite consensus disorder prediction 445 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02398 Viun-Chr10 38262757 38265180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02398 65 364 Receptor kinase-like Gene Family AT3G58690 51.634 1.54e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun10g02398 PK_Tyr_Ser-Thr 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02398 - - gmx:100790454 756.518