Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02380 ATGTCAAGTTTCCCCAACACAGTGTCGGAAGCCCGGAGGTCCGGCAAGGCGCCGGAAAAGTCCTCTTTTTCTCAGACTTGCAGTCTCTTGAGCCAGTTCTTGAAGGAGAAACGAGCTTCTGGTGATTCCGCTCTTGGAATGGGTGGGAAAATGGAACCTAAAGCCAGTACGAAGGATTTGTTTGGCAGCCTGCAAAACTCAGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATCTTAGATCACCGGTTCCTGAATCTCCTCAAATGACAATATTCTATGCTGGAAAAATGTTGGTATTTGATGGTTTTCCACCGGAGAAAGCAACAGAGGTCATGGAGTTGGCCACCAAGCTGGCGTTGGACACTTCCGGCGCCGATGAAACTCCCCCCAGTGCTCCGGTTACCACCAAAGAATTGGCTGAGACCAAAGTGCCTCAAACAAACACCTCAGAAACCCCTAAGCCAGGAAGCCAAGGGGTTGGTTCAGATATGAGGTACCCTAGAAGAGCTTCACTTCTAAAATTCCTCGAGAAAAGAAAAGAAAGGGTTAATGCGAGAGGGCCATATCAAGTGAACAATCAGAAAGCAGAAGGAAGCAGTTCAGGTGGTGATCCTGAAGATCAATGTTCGAAACAGTTTGACCTTAACTTGTAG 702 0.4758 MSSFPNTVSEARRSGKAPEKSSFSQTCSLLSQFLKEKRASGDSALGMGGKMEPKASTKDLFGSLQNSDGALKLSASAMDFLPQLVENPCIKKSNLRSPVPESPQMTIFYAGKMLVFDGFPPEKATEVMELATKLALDTSGADETPPSAPVTTKELAETKVPQTNTSETPKPGSQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQVNNQKAEGSSSGGDPEDQCSKQFDLNL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02380 233 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 216 IPR040390 -
Viun10g02380 233 SMART tify_2 98 133 IPR010399 -
Viun10g02380 233 Pfam Jas motif 184 206 IPR018467 -
Viun10g02380 233 MobiDBLite consensus disorder prediction 186 201 - -
Viun10g02380 233 Pfam tify domain 100 131 IPR010399 -
Viun10g02380 233 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Viun10g02380 233 MobiDBLite consensus disorder prediction 203 233 - -
Viun10g02380 233 MobiDBLite consensus disorder prediction 156 173 - -
Viun10g02380 233 MobiDBLite consensus disorder prediction 1 25 - -
Viun10g02380 233 MobiDBLite consensus disorder prediction 137 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02380 Viun-Chr10 38075656 38078044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02380 8 207 Tify Gene Family AT1G19180 34.934 2.15e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun10g02380 tify 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02380 K13464 - gmx:100778559 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02380 10 38075656 38078044 Viun10g02380 10 38075656 38078044 ECH