Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02379 ATGCAGAATCATAGGCTGAAGCAGCAGCAACAACAACAGGCTCTGATGCAACAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAACCTCTTTTGCAAGAAGTTTTTGCTGGTACCGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCACTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTTAACGGAAGGCATCTATTTGGCCAGCCTATTAAAGTTAATTGGGCATATGCCAGTGGTCAGCGAGAGGACACATCAGGTCATTACAACATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACACTAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACCGGGCGTTCAAGAGGATTTGGATTTGTTTCTTTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGGTGTCTAATAGTGATGCTCCTGAGAACAATGCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGTCACTTCCATTCTCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTTCCTGGGCTATCTGCAAACGATCTTTTGGCATACGAGCGACAGCTAGCAATGAGTAAGATGGGGAGTGTGCACGCCTTGATGCATCCCCAAGGCCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCAAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1263 0.46 MQNHRLKQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSEDGKEVSNSDAPENNAQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSANDLLAYERQLAMSKMGSVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02379 420 SMART rrm1_1 262 332 IPR000504 GO:0003723
Viun10g02379 420 SMART rrm1_1 141 214 IPR000504 GO:0003723
Viun10g02379 420 SMART rrm1_1 56 125 IPR000504 GO:0003723
Viun10g02379 420 FunFam Oligouridylate-binding protein 1C 238 340 - -
Viun10g02379 420 CDD RRM1_PUB1 57 127 - -
Viun10g02379 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Viun10g02379 420 FunFam oligouridylate-binding protein 1-like isoform X2 138 233 - -
Viun10g02379 420 MobiDBLite consensus disorder prediction 222 256 - -
Viun10g02379 420 SUPERFAMILY RNA-binding domain, RBD 134 222 IPR035979 GO:0003676
Viun10g02379 420 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Viun10g02379 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Viun10g02379 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 320 IPR000504 GO:0003723
Viun10g02379 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Viun10g02379 420 SUPERFAMILY RNA-binding domain, RBD 250 342 IPR035979 GO:0003676
Viun10g02379 420 CDD RRM2_PUB1 139 218 - -
Viun10g02379 420 Gene3D - 1 138 IPR012677 -
Viun10g02379 420 MobiDBLite consensus disorder prediction 232 256 - -
Viun10g02379 420 Gene3D - 139 220 IPR012677 -
Viun10g02379 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Viun10g02379 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 336 IPR000504 GO:0003723
Viun10g02379 420 Gene3D - 238 340 IPR012677 -
Viun10g02379 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Viun10g02379 420 FunFam oligouridylate-binding protein 1B-like isoform X2 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02379 Viun-Chr10 38049645 38055302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02379 50 324 Eukaryotic Initiation Factors Gene Family AT1G49760 30.272 1.07e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02379 K13201 - gmx:100781227 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02379 10 38049645 38055302 Viun10g02379 10 38049645 38055302 ECH