Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02378 ATGCAGAATCATAGGCTGAAGCAGCAGCAACAACAACAGGCTCTGATGCAACAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAACCTCTTTTGCAAGAAGTTTTTGCTGGTACCGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCACTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTTAACGGAAGGCATCTATTTGGCCAGCCTATTAAAGTTAATTGGGCATATGCCAGTGGTCAGCGAGAGGACACATCAGGTCATTACAACATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACACTAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACCGGGCGTTCAAGAGGATTTGGATTTGTTTCTTTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGATGGTAAAGAGGTGTCTAATAGTGATGCTCCTGAGAACAATGCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGTCACTTCCATTCTCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTTCCTGGGCTATCTGCAAACGATCTTTTGGCATACGAGCGACAGCTAGCAATGAGTAAGATGGGGAGTGTGCACGCCTTGATGCATCCCCAAGGCCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCAAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1260 0.4603 MQNHRLKQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSDGKEVSNSDAPENNAQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSANDLLAYERQLAMSKMGSVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02378 419 CDD RRM1_PUB1 57 127 - -
Viun10g02378 419 FunFam Oligouridylate-binding protein 1C 238 339 - -
Viun10g02378 419 Gene3D - 137 230 IPR012677 -
Viun10g02378 419 Gene3D - 1 136 IPR012677 -
Viun10g02378 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 338 - -
Viun10g02378 419 FunFam oligouridylate-binding protein 1-like isoform X2 138 233 - -
Viun10g02378 419 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Viun10g02378 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 319 IPR000504 GO:0003723
Viun10g02378 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Viun10g02378 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Viun10g02378 419 SUPERFAMILY RNA-binding domain, RBD 249 342 IPR035979 GO:0003676
Viun10g02378 419 SMART rrm1_1 261 331 IPR000504 GO:0003723
Viun10g02378 419 SMART rrm1_1 141 214 IPR000504 GO:0003723
Viun10g02378 419 SMART rrm1_1 56 125 IPR000504 GO:0003723
Viun10g02378 419 CDD RRM2_PUB1 139 218 - -
Viun10g02378 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Viun10g02378 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Viun10g02378 419 SUPERFAMILY RNA-binding domain, RBD 134 222 IPR035979 GO:0003676
Viun10g02378 419 Gene3D - 231 339 IPR012677 -
Viun10g02378 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Viun10g02378 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02378 Viun-Chr10 38049645 38055302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02378 50 323 Eukaryotic Initiation Factors Gene Family AT1G49760 29.693 2.73e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02378 K13201 - gmx:100781227 769.229