Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02371 ATGGCGATCGAAGATTCTCCTATGGAACTGATCGAAATCTCTACGAAATCCGAAGGATCCGACTCGGATTCCGAATGGGAGGACTCGGGAGAAGACTCCGATTACGACGCGCTCGAAGAAACTCATAGCAAATTCTCAAACCTCTCACTTAAGCAAAAGGAAAAAGCGCGCTCTATCGAGGAGAAGGGTCGAGGTGAGGAAGTGTTGGCGACCACTGCATCTGTAAATGATGGAGAGAATTTTGGGAAAGTTCAAAAGTTAATCGAAGAGGGATTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTAAGGCTAACTGGAAACAAGGACACACTTATAGAACGCATAAGGGAGCATTTGAAGATTTTAAATGGAGGGGAGAAGAAGTATCCGCCTTCTAGCTTTGTGTTAAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTTAGCATCGCATCCCGGAGTGCTACTGGTCCATCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTTTGAGACAGAAATGGGAAGATGAAGCAAAAAGGCAGAGAATATTGATGGAAAAACACTCTAGGGGATCTCTTGCTAGGGCAGATAGAGAAGCAAGGGTTCAAGAAAAGGAGAAGAGAAAGAGTACTAAGGAAAATAGGGTCTCCAAAAAGGAAGCAAGGAACCAACGTCAATCAAATTCACACATTACAAGGCCACAATATCAACCTCAAGGAACAAATGTAGTCATTAATACAGAAAACCCTGAATTTCCATCTCGAAATTCAGTTTTACCTTTCAATATAATGGAAGAAAGATCCTCTATTTTAAACAATCCAGCAGCAATTTTTGGTGGAACATCATTTGCTGTTCACAGTATGCATAATCAACAAGCTTGGAATTACACAAGTGACTTTAGGAATACTTTTGATATTGGTCGTGTTAGAGGAGCAGATATTGGTGCAAACTATAATTATGCAGACCCCCATTTCAGAGAAAACCTACATAGTTTTGTGAACTGCCACCCTAACATGGCTCAGAAGACAACTGGATTTCCAATGGGCACTCATCATAGAATACCTTTGGCAAATGCAAACCACTCTCACCCATTTATGGCACCCAACAGAGAAAGCTTTAAGGTAAATCAGGTGTGCAGACATTATTCCCGTGGAAGGTGCTATTTTGGGGATAACTGCAAATTCTTACATGATCTTAGAGACAGAGGGAATGCATGA 1407 0.4158 MAIEDSPMELIEISTKSEGSDSDSEWEDSGEDSDYDALEETHSKFSNLSLKQKEKARSIEEKGRGEEVLATTASVNDGENFGKVQKLIEEGLLEKLKVDECKLYLRKNGLRLTGNKDTLIERIREHLKILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFSIASRSATGPSCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQRILMEKHSRGSLARADREARVQEKEKRKSTKENRVSKKEARNQRQSNSHITRPQYQPQGTNVVINTENPEFPSRNSVLPFNIMEERSSILNNPAAIFGGTSFAVHSMHNQQAWNYTSDFRNTFDIGRVRGADIGANYNYADPHFRENLHSFVNCHPNMAQKTTGFPMGTHHRIPLANANHSHPFMAPNRESFKVNQVCRHYSRGRCYFGDNCKFLHDLRDRGNA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02371 468 Gene3D SAP domain 80 138 IPR036361 -
Viun10g02371 468 Pfam SAP domain 93 127 IPR003034 -
Viun10g02371 468 SMART c3hfinal6 437 462 IPR000571 GO:0046872
Viun10g02371 468 ProSiteProfiles Zinc finger C3H1-type profile. 436 463 IPR000571 GO:0046872
Viun10g02371 468 Pfam CCCH-type zinc finger 441 461 IPR041367 -
Viun10g02371 468 MobiDBLite consensus disorder prediction 248 305 - -
Viun10g02371 468 MobiDBLite consensus disorder prediction 1 39 - -
Viun10g02371 468 SUPERFAMILY SAP domain 83 128 IPR036361 -
Viun10g02371 468 PANTHER SAP DOMAIN-CONTAINING PROTEIN 16 463 - -
Viun10g02371 468 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Viun10g02371 468 MobiDBLite consensus disorder prediction 290 305 - -
Viun10g02371 468 SMART sap_9 93 127 IPR003034 -
Viun10g02371 468 Gene3D - 429 467 - -
Viun10g02371 468 MobiDBLite consensus disorder prediction 248 289 - -
Viun10g02371 468 Coils Coil 256 285 - -
Viun10g02371 468 SUPERFAMILY CCCH zinc finger 438 461 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02371 Viun-Chr10 38009691 38012904 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun10g02371 SAP 5.8e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02371 - - gmx:100815642 641.728