Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02368 ATGCAGGCCATGGATGATTCTTTTTCCTTTGACGGTGACTCCTTCTCGAGCCACCAGAGACGCCACTATCCAACACCAGCGAGTTATCACAGTGTGTCTCGCTCTGGCTCTTTCATACCATCTAGCTTTCACAGCGATGCCACTTCCACAACAAGAGCTCGCCGCAACCGAGTTCCTACCACACCCTTCGCTTCAGATGATGATCACTCATGGCAAGAAGAGGTTTCATGGAACTTTGAGGCCACCGGGTGGCACCATTACAGCACAAACTTCGGTTCTCTTCTGACTCCATGGCCAGCTAGCTCCCCTTCTGATCACAGCCGAATATTTCGACGATCAGCCAATGACTTCTACCTTTCAAGAACAAGTGGGTTCAGAGGTATCGCAAGCTCTTCTTATGAACACTCTGGCTATGGTAGAGTTGAACTTAAGAGCTATGTTGCGAGGGACAATGATCATAGTTACTTTGATCGTGGATTATCTACATCGGGGTTAATCCACCAGCAGAGTAGCAGAAAAAGCAAGAGTAGTCCATTGGCTGTGGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAAGAGCATGTAATTTCACCTAATGGCAATGGTCATGATCTTGAATCCCCATATCTTAAACATGGTCATGGTGATTATGTTGGTCATGGACTACCATCACATGATGGTAACCATGTTTACGGAAGTGGTGGGGGCTATGCCTATCGCCACCATGACATTGAGAAGTATTCATATGATGAAGAAGGTGAGGAGGACATGGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGATTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTTGATGCTTGTGTTTGTGGGGTGTTTAGGGGCCCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACTTGGTCAATAAGATTTCAGAAGCAGACAAGGACAAAAAGCAGATGATGAAGGATGTAGAAAAGATATGCGTATTTATGACGGGGCTAGCTGCTGTCGTGGTAGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGCGCGATCTGCACAGAGAATTAGAAGTGAGTATCTGAGAGCAGTTCTTAGACAGGACATTACTTTCTTTGATACAGATATCAACACAGGTGATATTATGCATGGAATTGCAAGCGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCACACTTCATTCATCATATATTTACATTCATATGTGGATACACAGTTGGGTTTAAAAGATCATGGAAAGTGTCTCTTGTGGTATTCTCAGTCACTCCATTGACAATGTTTTGTGGCATGGCTTACAAAGCACTCTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCGTGGCGGAGCAAGCCATAAGTTCAATTAGGACAGTTTTTTCATTTGTTGCAGAAAGCCAATTAGCTGGAAAATATGATGAACTGTTGCAGCAATCAGCTCCAATAGGGGCAAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCATTCTGGTATGGCTCTGTATTAATCTCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGAGGAAGAGGATTGGCATTGGCACTTTCATATTTTGCACAGTTTGCTCAAGGGACTGTTGCAGCAAGCCGTGTATTCCATGTTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAATTAAAAAGTGTTAGTTTTGCATATCCATCACGTCCTGATTCTCTGATACTTCATTCCCTTAGTTTGATAATACCATCTTCAAAAACTGTGGCACTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATTTTTGCTCTCATAGAGAGGTTTTATGACCCCACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGAAATCAGATTGGGATGGTTGGTCAGGAGCCAATCCTCTTTGCAACATCTATTCTGGAAAACGTGATGATGGGGAAAGATAATGCCACAAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGAGGGACAAAACTCTCCGGAGGTCAGAAGCAGAGAATTGCATTGGCTCGAGCAATGATGAAAGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCGGTCCAACGGGCAATTGACAAGATTTCTGCTGGCCGAACAACCATTGTGATTGCTCATAGAATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACATGGTTCTGTCTCTGAGATTGGTGACCATAGACAGCTTATGTCAAAAGCAGGAGCATACTACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCTAGCTATAGATAATGGCATACAAAAAGCCAATGATCTATCCATATATGATAAATCTGCTGCTGCTTTATCAGGATCAAGATATTTGGTTGATATCCCTAGTCCTAAAGACTTACTATCTATGCATGAAGTGGAGAAACAGGAAGACATGGAAGATGATGAACAATATACAAAGGCAAAAAAATACAAACTTTCTGAAGTATGGAAGCTGCAAAAGCCAGAGCTTGTGATGCTATTTTCAGGACTTATTCTTGGAATGTTTGCCGGTGCTATTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCCTTGGAAGTGTATTTTGGCCATGACACTCATAAGATGAGAAGAGATGTTGCACACCTTTGTTTAACACTTGTTGGCCTTGGAATTGGTTGCATACTTTCCATGACAGGACAACAAGGTCTGTGTGGTTGGGCCGGATCAAAGCTGACACAAAGAGTTAGGGACATCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCACTAGACTGTGTTAGTTTTAGATCAGTACTTGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGAATTGGTGTCTCCTTTGCGTTCAATTGGAGACTAACGCTTGTGGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAACTTGATCATAAACATTGGGCCGCGAGTGGACAACGACTCTTATGCCAAAGCTAGTAACATTGCTTCTGGTGCAGTGTCCAACATAAGGACAGTTACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTATCAGAGCCTAGAAGAAAATCATTACGAAGTTCACAACTTCAAGGTCTTATGTTTGGGTTGTTTCAAGGTTCGATGTATGGAGCATACACCTTAACACTTTGGTTTGGCTCATACCTTGTAGAACATGACAAGGCAAAACTTGGAGACGTTTTCAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCGGCTACAGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGTAGACAGATCAAAGCCATTGAACATAGAATTCAAGATGGTGACTTTCACATACCCATCTAGGCCAGAAGTCACTGTGTTGAGGGACTTCTGTTTGAAGGTCAAAGGTGGAAGTACAGTTGCCCTGGTGGGACCCAGTGGGTCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGATTCTATGATCCTGACCAAGGAAAGGTGATGATGAATGGGACAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGCATAAGGGAAAATATTGCATTTGGGGACCCAAATGCTTCATGGTCTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATACACAAGTTCATTAGTGGCCTTCCTCAAGGTTATGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCAATAGCAAGGGCCATATTGAAGAGATCGAGGGTACTTTTGCTTGATGAGGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCCAAAGATGCAACAACCATAATAGTTGCTCACCGTCTTTCAACAATCAGAGAAGCTGATAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGTAGCCATGACACTCTCATGGCTTCAACTAAAAATGGCTTGTATGCTACCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 4509 0.4349 MQAMDDSFSFDGDSFSSHQRRHYPTPASYHSVSRSGSFIPSSFHSDATSTTRARRNRVPTTPFASDDDHSWQEEVSWNFEATGWHHYSTNFGSLLTPWPASSPSDHSRIFRRSANDFYLSRTSGFRGIASSSYEHSGYGRVELKSYVARDNDHSYFDRGLSTSGLIHQQSSRKSKSSPLAVEDELSMIDYSITEEHVISPNGNGHDLESPYLKHGHGDYVGHGLPSHDGNHVYGSGGGYAYRHHDIEKYSYDEEGEEDMDEEDASPPKAVGLFSLFRYSTKWDLMLVFVGCLGALINGGSLPWYSYLFGDLVNKISEADKDKKQMMKDVEKICVFMTGLAAVVVVGAYLQITCWRLVGARSAQRIRSEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYTVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSVAEQAISSIRTVFSFVAESQLAGKYDELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLISKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFHVIERIPEIDPYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLSLIIPSSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRNQIGMVGQEPILFATSILENVMMGKDNATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMMKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVSEIGDHRQLMSKAGAYYNLVKLATEAISKPLAIDNGIQKANDLSIYDKSAAALSGSRYLVDIPSPKDLLSMHEVEKQEDMEDDEQYTKAKKYKLSEVWKLQKPELVMLFSGLILGMFAGAILSLFPLVLGISLEVYFGHDTHKMRRDVAHLCLTLVGLGIGCILSMTGQQGLCGWAGSKLTQRVRDILFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGIGVSFAFNWRLTLVAAAVTPFALGASYINLIINIGPRVDNDSYAKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQLQGLMFGLFQGSMYGAYTLTLWFGSYLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVQDIIKRRPLIDNDRTKGRKVDRSKPLNIEFKMVTFTYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMNGTDLREIDVKWLRRQMALVGQEPALFAGSIRENIAFGDPNASWSEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHIQEALKNVAKDATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASTKNGLYATLVRAETEANAFS 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02368 1502 Gene3D ABC transporter type 1, transmembrane domain 274 852 IPR036640 GO:0005524|GO:0016020
Viun10g02368 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 847 IPR003439 GO:0005524
Viun10g02368 1502 SUPERFAMILY ABC transporter transmembrane region 274 596 IPR036640 GO:0005524|GO:0016020
Viun10g02368 1502 ProSitePatterns ABC transporters family signature. 1395 1409 IPR017871 GO:0005524|GO:0016887
Viun10g02368 1502 Gene3D ABC transporter type 1, transmembrane domain 1106 1252 IPR036640 GO:0005524|GO:0016020
Viun10g02368 1502 Gene3D ABC transporter type 1, transmembrane domain 876 1098 IPR036640 GO:0005524|GO:0016020
Viun10g02368 1502 Pfam ABC transporter 629 778 IPR003439 GO:0005524
Viun10g02368 1502 CDD ABC_6TM_Pgp_ABCB1_D2_like 923 1238 - -
Viun10g02368 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 288 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02368 1502 MobiDBLite consensus disorder prediction 43 67 - -
Viun10g02368 1502 PANTHER ABC TRANSPORTER B FAMILY 252 847 IPR039421 -
Viun10g02368 1502 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Viun10g02368 1502 FunFam ABC transporter B family member 19 274 606 - -
Viun10g02368 1502 CDD ABC_MTABC3_MDL1_MDL2 1256 1494 - -
Viun10g02368 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 936 1220 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02368 1502 MobiDBLite consensus disorder prediction 43 66 - -
Viun10g02368 1502 MobiDBLite consensus disorder prediction 1 28 - -
Viun10g02368 1502 FunFam ABC transporter B family member 1 1245 1496 - -
Viun10g02368 1502 Pfam ABC transporter transmembrane region 935 1204 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02368 1502 Pfam ABC transporter transmembrane region 287 558 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g02368 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1493 IPR027417 -
Viun10g02368 1502 SMART AAA_5 638 839 IPR003593 GO:0016887
Viun10g02368 1502 SMART AAA_5 1283 1469 IPR003593 GO:0016887
Viun10g02368 1502 SUPERFAMILY ABC transporter transmembrane region 921 1239 IPR036640 GO:0005524|GO:0016020
Viun10g02368 1502 CDD ABC_MTABC3_MDL1_MDL2 611 848 - -
Viun10g02368 1502 Gene3D - 1254 1496 IPR027417 -
Viun10g02368 1502 CDD ABC_6TM_Pgp_ABCB1_D1_like 288 584 - -
Viun10g02368 1502 Pfam ABC transporter 1275 1422 IPR003439 GO:0005524
Viun10g02368 1502 FunFam ABC transporter B family member 1 601 849 - -
Viun10g02368 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 847 IPR027417 -
Viun10g02368 1502 Gene3D - 601 849 IPR027417 -
Viun10g02368 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1256 1492 IPR003439 GO:0005524
Viun10g02368 1502 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1107 1247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02368 Viun-Chr10 37987468 37995794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02368 964 1499 Calmodulin-binding Proteins AT2G36910 38.476 7.82e-109 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02368 K05658 - gmx:100816700 2574.27