Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02366 ATGGACGACGAGGAAGAGATCCAGTCGCATCCGTCGCCGGCGAGCGGATCCCCGGTGTCTTCTCCGCGGGCGAACGGACGGATAACGGTAACGGTCGCGGCGCCAGCGCCGGCAAACAGTTTGGCATTAGCGCTTCCAATTCAGCAGCCGGTGAAGGGGAACGGTGGCGGAGGAGGAGGCGGCGGTGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAACACTGGAAGGAGGTGGCGGATATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACAGATATTCAGTGCAAAAACCGGATCGACACCGTAAAGAAGAAGTACAAATCGGAGAAGGCTAAGATCGCCGCCGGCGCCACCAGCAAGTGGCCGTTCTTCGACCGTTTGGACAAATTAATCGGTCCGAGCGCCAAGATCCCCGGCGCCGGAGGCTCCTCCGGTGCCGTCGGCACCAGCGCTGCCGGCAACAGTATTTTACAGTCGCAGAAAGTGCCGTTAGGGATTCCGGTCGGCGTTCGCGACGTCGTGAATCAGTATCACCGTCCTCAAAGGCCGGCGCAGCAACAACAACCGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCGCCGTTGGAATCAGATTCGGACGAGCGTGGCGCGTCGTCACCAGCTTCGAGCGACAGTTTCCCCCCGGAGAGTTTCGAGCGGAAGAGGCCGCGGGTGATGAGTTCGAACGCAGGGAAAGGAAGCGAAGGAAGACGGAGGGCGAAGGGTTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCTTATGAACACGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAACTGGAGATTTCGCAACTCAAGCTTGGAAGAAAAGGTGCTAACCCTAGCAACAATCACCATAGCACCACCACCATCAATAACAATAACAACAATCATAACAATAATAGTGATAGTGAGTGA 1131 0.5729 MDDEEEIQSHPSPASGSPVSSPRANGRITVTVAAPAPANSLALALPIQQPVKGNGGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDKLIGPSAKIPGAGGSSGAVGTSAAGNSILQSQKVPLGIPVGVRDVVNQYHRPQRPAQQQQPQPVPLKNQKIQFRRRGPPLESDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRRAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPSNNHHSTTTINNNNNNHNNNSDSE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02366 376 MobiDBLite consensus disorder prediction 10 27 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 158 177 - -
Viun10g02366 376 Pfam Myb/SANT-like DNA-binding domain 66 156 IPR044822 -
Viun10g02366 376 FunFam trihelix transcription factor ASIL2 69 134 - -
Viun10g02366 376 Gene3D - 69 134 - -
Viun10g02366 376 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 24 345 IPR044823 -
Viun10g02366 376 MobiDBLite consensus disorder prediction 346 376 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 205 221 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 1 28 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 347 376 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 48 67 - -
Viun10g02366 376 MobiDBLite consensus disorder prediction 199 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02366 Viun-Chr10 37955465 37957532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02366 1 359 Trihelix Transcription Factor Family AT3G14180 48.394 1.49e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun10g02366 Myb_DNA-bind_4 7.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02366 - - gmx:100812599 527.709