Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02358 ATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCTTGGGGTTGAACAAGGAGTGCACTGAATTGGAGCTAAAGAATGCATATAAGAAACTTGCAAAGAAATGGCACCCGGATCGTTGTTCAGCATCTGGGAATTCAGAGTTAGTGGAACAAGCTAAGAAGAAATTCCAGGAAATTGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTTGGTGTCTACGATAGTGATGACGACGAAAACGGTATGGGGGACTTTTTGGACGAAATGTTAACAATGATGAGTCAGACCAAATCAAATGAAAATGGAGAGGAGAGTTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTCAAGCTGATATAGGATTGGATGGAAGCCCTTCTCTTTCTTCTGCCAATTGCTCTAATTCATCATCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCACTGAGATGAAATTTGGGAAGCCAGAGGATTCCTCTGTCTTTGACACCAGTTACCAGAATTTCTGTTTTGGGGTCGGTCATGTAAACTATCATTACCAATGA 591 0.4027 MANEGNKSNDFYTILGLNKECTELELKNAYKKLAKKWHPDRCSASGNSELVEQAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFQADIGLDGSPSLSSANCSNSSSYMTYSESSSSNKRNSTEMKFGKPEDSSVFDTSYQNFCFGVGHVNYHYQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02358 196 Gene3D DnaJ domain 7 134 IPR036869 -
Viun10g02358 196 PRINTS DnaJ domain signature 53 73 IPR001623 -
Viun10g02358 196 PRINTS DnaJ domain signature 12 30 IPR001623 -
Viun10g02358 196 PRINTS DnaJ domain signature 30 45 IPR001623 -
Viun10g02358 196 PRINTS DnaJ domain signature 73 92 IPR001623 -
Viun10g02358 196 PANTHER PUTATIVE, EXPRESSED-RELATED 2 178 - -
Viun10g02358 196 CDD DnaJ 10 70 IPR001623 -
Viun10g02358 196 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Viun10g02358 196 SMART dnaj_3 9 73 IPR001623 -
Viun10g02358 196 Pfam DnaJ domain 10 78 IPR001623 -
Viun10g02358 196 MobiDBLite consensus disorder prediction 149 169 - -
Viun10g02358 196 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
Viun10g02358 196 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Viun10g02358 196 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02358 Viun-Chr10 37942007 37945173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02358 12 78 C2H2 Transcription Factor Family AT1G74250 42.647 4.98e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02358 - - gmx:100779251 315.849