Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02348 ATGGCCGCCGCACCCAACGCCGCCGCCCCGCCGCGCCAGCTCTCCCAAAAGGAAGCCGACATCCAGATGATGTTGGCTGCCGACGTTCACCTCGGCACGAAGAACTGTGACTTCCAAATGGAACGTTACATCTTCAAGCGCCGCAACGATGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCAGCTAGGCCTTACGGTCAGAGGGCGGTTCTCAAATTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGACACACTCCCGGAACCTTTACCAATCAGCTCCAAACCTCTTTCAGCGAGCCTCGCCTCCTTATCCTTACGGATCCAAGAACTGATCATCAGCCCATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCTTTTTGTGACACTGACTCGCCCATGAGGTATGTTGACATCGGAATTCCTGCCAACAACAAGGGAAAACACAGCATTGGATGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAAGAGGAAGCTCCTGCCGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCCGGAACGATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCAGCTGTTCCTGGTGTCAACTGGGGAGCGCCACCCTCTGCAGAAGCTCCTGTCGCAGGAGATTGGGGCGAGGCTGTTCCACCGCCACAACAAATACCTCTTCCACCTACCGGAGTTGAATCTGTCCAACCAACTGGATGGGATTAA 930 0.5118 MAAAPNAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPPSAEAPVAGDWGEAVPPPQQIPLPPTGVESVQPTGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02348 309 MobiDBLite consensus disorder prediction 246 309 - -
Viun10g02348 309 NCBIfam 30S ribosomal protein S2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 PANTHER 40S RIBOSOMAL PROTEIN SA 11 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Viun10g02348 309 Hamap 40S ribosomal protein SA [rps-0]. 8 256 IPR027498 GO:0003735|GO:0006412|GO:0015935
Viun10g02348 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 Gene3D - 20 226 - -
Viun10g02348 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Viun10g02348 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun10g02348 309 FunFam 40S ribosomal protein SA 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02348 Viun-Chr10 37899413 37901320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02348 3 267 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 77.612 5.04e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02348 K02998 - gmx:100805318 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02348 10 37899413 37901320 Viun10g02348 10 37899413 37901320 ECH