Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02338 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCTGCCGGCCGGTCCCGACGGGTGACCCCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGAGAATTCAAGGATGATTCTGAAATCGAAGATGATGATGATGAGGATGAAGAGGAAGACTTGATGATGGCTGGTGTGAAGAAGCCCGTTGGCTTTTCTCGCCCCAACAAGACTTCTAAGTCTCTCTCTCCTGGATCAACAACTGTAAAATCTGTGGAATCAAAAGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAGGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCGAAACGCCTCAAGGTGATTCCAGAGGAAAACCTGAAGCCGAAAATGAACCAGTTGTTCAATTTTGGTGACAATATGGAGGAGTACTACAACCAGGTGGAACAGAAGCCAGTGGTGAACCAGTATGTGAACCCTGGTTCGTTCACTGGAAACTGTGTTCAGTTCTCACCAGTTACTCAATCTACTGATGTTACTGCTTATTTCAGTTCTGAGCATTCGAGCAATTCGTTTGATTATTCTGACCTTGGATGGGGTGAACAAGTTCCAAGAACTCCTGAGATCTCATCCATGCTTTCTGCAACTCTGGAGGGTGAATCTCAGTTTGTGCAGGATCAGATTCAGAAGAAAGACAGTGAGAACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATTGAATCCCAGTTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCACTGATGCAACTCAAGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGATCTGCCATCAATGGCAGGCGTTTTCTGA 1119 0.4835 MCGGAIISDFIPAGPAGRSRRVTPDILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEEEDLMMAGVKKPVGFSRPNKTSKSLSPGSTTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEENLKPKMNQLFNFGDNMEEYYNQVEQKPVVNQYVNPGSFTGNCVQFSPVTQSTDVTAYFSSEHSSNSFDYSDLGWGEQVPRTPEISSMLSATLEGESQFVQDQIQKKDSENMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGTDATQDAGNPLNLWSFDDLPSMAGVF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02338 372 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Viun10g02338 372 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Viun10g02338 372 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 PANTHER DNA-BINDING DOMAIN 85 286 IPR044808 GO:0003700|GO:0009873
Viun10g02338 372 MobiDBLite consensus disorder prediction 51 117 - -
Viun10g02338 372 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Viun10g02338 372 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Viun10g02338 372 MobiDBLite consensus disorder prediction 54 68 - -
Viun10g02338 372 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02338 Viun-Chr10 37835039 37837888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02338 1 368 AP2-EREBP Transcription Factor Family AT3G14230 42.476 3.97e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g02338 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02338 K09286 - gmx:100818646 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02338 10 37835039 37837888 Viun10g02338 10 37835039 37837888 ECH