Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02332 ATGGTTCATCAGATGGGTTCGAAGGCTCCAAAGAAAGCATTTTCAAAATCTGATAGAAAAGATGCTAAGAAGAAAGTGTTGGGTTCCTCATCGAAAAGTGAGAGGGTAGGGTCAAGTAGAAGACGCATCGCAGTGGATGCAGAAAACAACGAGGAAGATGTTCCTTTGAGAATCCGCAAAGGGAAACAGGTAAAGAGAGAATCTTTGTGTATGTGTGATATTTGCATGGATGTGATACCTGATGAAAGGAAGTTCAAGATCCAAAACTGTTCTCACATCTTTTGCAATGGCTGCATCAGAAGACATGTTGCTGCAAAGATCGAGGGGAATAAAACAGTGGTGCGATGTCCAAACCCTAATTGCAAGAATGTTATAGAGCCTGAGCATTGTCGTTCAATTATCTCTAAAAAAGTGTTTGATAAATGGGGAGATATCCTTTGTGAGAATCTAGTGGTTGAAACGCAAAAGTTTTTCTGTCCTTTTAAGGATTGTTCGGCTTTGTTGATACGTGATGGTGACGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAAACTGTGAGGAGTTTAAGAGGTCGAAAAGAGAGAAAGGAGAAAACGGAGACTCATTGGTGCAGAAACTTGCGAAGAAGAAGGGTTGGAGAAAATGTCCAAAATGCAGGTTTTATGTAGAAAGAATTGCAGGATGTTCACTCATAACCTGCAGGGATAGCAAGGCAAAGCAGAGACCCTGTATAGAAGGGAATAGTCACAGTGGGAAGGATATTAAAGAGAGGGAGAAAATTCGAAATTTGAGTTCAAAACCAGAACATTGGCGCTCATTGTGGGGTATGGAAAAATTAGTAGTTGACACCACTTATACCAGACCAAATGACATCAGGAATAATGGAGGTGACCCTCCAACCGTGGAGCAAATCATGCAATACATTGAAGCCTTGAGGGAAGAAAACAAAAACATGTGGAAGCAGGCGAAGGAAGAACGATCCCGGCGGTAG 1041 0.4207 MVHQMGSKAPKKAFSKSDRKDAKKKVLGSSSKSERVGSSRRRIAVDAENNEEDVPLRIRKGKQVKRESLCMCDICMDVIPDERKFKIQNCSHIFCNGCIRRHVAAKIEGNKTVVRCPNPNCKNVIEPEHCRSIISKKVFDKWGDILCENLVVETQKFFCPFKDCSALLIRDGDEVVTSSECPHCNRLFCAQCKVSWHAGINCEEFKRSKREKGENGDSLVQKLAKKKGWRKCPKCRFYVERIAGCSLITCRDSKAKQRPCIEGNSHSGKDIKEREKIRNLSSKPEHWRSLWGMEKLVVDTTYTRPNDIRNNGGDPPTVEQIMQYIEALREENKNMWKQAKEERSRR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02332 346 ProSiteProfiles Zinc finger RING-type profile. 72 117 IPR001841 -
Viun10g02332 346 Pfam IBR domain, a half RING-finger domain 154 202 IPR002867 GO:0008270
Viun10g02332 346 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 263 IPR031127 GO:0004842|GO:0016567
Viun10g02332 346 Pfam Zinc finger, C3HC4 type (RING finger) 72 117 IPR018957 GO:0046872
Viun10g02332 346 MobiDBLite consensus disorder prediction 1 46 - -
Viun10g02332 346 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Viun10g02332 346 SUPERFAMILY RING/U-box 67 149 - -
Viun10g02332 346 SMART ibrneu5 140 202 IPR002867 GO:0008270
Viun10g02332 346 MobiDBLite consensus disorder prediction 12 46 - -
Viun10g02332 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Viun10g02332 346 SUPERFAMILY RING/U-box 218 250 - -
Viun10g02332 346 Gene3D - 199 345 - -
Viun10g02332 346 ProSiteProfiles TRIAD supradomain profile. 68 290 IPR044066 -
Viun10g02332 346 CDD BRcat_RBR_unk 153 205 - -
Viun10g02332 346 SUPERFAMILY RING/U-box 144 208 - -
Viun10g02332 346 FunFam RBR-type E3 ubiquitin transferase 67 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02332 Viun-Chr10 37801747 37804447 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02332 72 254 C3H Transcription Factor Family AT2G19610 29.897 1.46e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02332 K11975 - gmx:100815626 273.478