Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02330 ATGGCTCCTCTTTCTGCAACAAACAATGGAAGAACTTCTAATTCAAGAAGGAGGAAGATTGAGATCAAAGATGTTGAACAGAGAAACAGAAGATGCGTCACCTTTTCCAAACGCAAATTAGGGCTTTTCAACAAACTCACTGAACTTTCTCTTCTATGCAGAGCAGAAACTGCTCTGATCATCATCTCTCAAAACGGAAACGTCTATTCCTGTGGCTACCCCACCACCGACGCCGTCCTTCGCCGTTACATCACCGGAGCGTCATCGGAACAGTGCAGAGGTGCAAGAAGGAGAGAGCAAGAGGAGTTTCTTGAAAAACAAAGGTTGGAATATGAGAGTGTGCAAGATGAGTTGAAAGAAAAACAGAAGCAATTGAAAGAGATGAAAGAGGCACAGAAAAATAGTTCTTGCTTTGTTTCTTGGTGGAATCTCTCCACTGACAACATGGGTATGGAGGATCTTGAACAGTTCAAGATCTCTTTGGAGAGTTTGAAGCTTAACCTCATCACAGTGTTGCAAGAGAAGAAGCTTCATTGA 537 0.4283 MAPLSATNNGRTSNSRRRKIEIKDVEQRNRRCVTFSKRKLGLFNKLTELSLLCRAETALIIISQNGNVYSCGYPTTDAVLRRYITGASSEQCRGARRREQEEFLEKQRLEYESVQDELKEKQKQLKEMKEAQKNSSCFVSWWNLSTDNMGMEDLEQFKISLESLKLNLITVLQEKKLH 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02330 178 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 MobiDBLite consensus disorder prediction 1 20 - -
Viun10g02330 178 Gene3D - 27 112 IPR036879 GO:0003677|GO:0046983
Viun10g02330 178 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Viun10g02330 178 PANTHER MADS BOX PROTEIN 17 168 - -
Viun10g02330 178 SUPERFAMILY SRF-like 16 88 IPR036879 GO:0003677|GO:0046983
Viun10g02330 178 Coils Coil 97 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02330 Viun-Chr10 37783260 37783796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02330 17 170 Type I MADS-box Gene Family AT2G24840 31.677 4.24e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun10g02330 SRF-TF 6.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02330 - - gsj:114418701 207.994