Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02329 ATGGAGGGAGCTTCATCCTCATCTTCATCTAGGAATTTTCCCTCCACTGCTGAAGATCATTACTTGGTCGACGATTTCTACTTTTCAGTACTTTACGATGCTGAAGAAATATTTCCAATTTCGGATGAGAAATATGCTGAAGAGCTGCAACTACAAGAAGCACTCTATTCCTCCACGATGTCAAGTGGTAGGGTTGAAAAGGAAGCTGTTCAAGTGGATGTAGATGATGTCGCTGACCTCCTTTTGAGAAACCGCAAGAGGAAACGTAAAGAGAGCGGTGAAACTTCCCTTGCACACTGTGGTATTTGCATGGATGCCAAGCCTGGGGAAGAAATGTTCAGGAACCGAAACTGTTCTCACCTTTTTTGTGATAATTGCATTGGAGGACATGTTGCTGCAAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAAAATGCAAAGCGGTTATAGAGCCTGAGAATTGTCATTCAATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAATGTGGTGCTTGGATCACAAAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGATATGTGATGCAGGGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTTTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAGACTGTAAGGAGTTTCAGAGGTCGAAAAGAGAGAAAGGAGAGAATGGAGACTCATTGGTCAGTGAACTTGCCAAGACTAAACGTTGGAGAAGATGTTCAAAATGCAAAATTTACGTAGAAAGAATTGATGGATGTACTCATATCATGCAGATGTGGCCATGA 846 0.4161 MEGASSSSSSRNFPSTAEDHYLVDDFYFSVLYDAEEIFPISDEKYAEELQLQEALYSSTMSSGRVEKEAVQVDVDDVADLLLRNRKRKRKESGETSLAHCGICMDAKPGEEMFRNRNCSHLFCDNCIGGHVAAKIQENISMVKCPEPKCKAVIEPENCHSIIPKEVFDRWENALCENVVLGSQKFYCPFKDCSAMMICDAGEVVTSSECPHCNRLFCAQCKVSWHAGIDCKEFQRSKREKGENGDSLVSELAKTKRWRRCSKCKIYVERIDGCTHIMQMWP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02329 281 ProSiteProfiles Zinc finger RING-type profile. 100 148 IPR001841 -
Viun10g02329 281 FunFam RBR-type E3 ubiquitin transferase 95 181 - -
Viun10g02329 281 SMART ibrneu5 168 230 IPR002867 GO:0008270
Viun10g02329 281 SUPERFAMILY RING/U-box 95 177 - -
Viun10g02329 281 Pfam IBR domain, a half RING-finger domain 170 230 IPR002867 GO:0008270
Viun10g02329 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 182 IPR013083 -
Viun10g02329 281 ProSiteProfiles TRIAD supradomain profile. 96 281 IPR044066 -
Viun10g02329 281 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 276 IPR031127 GO:0004842|GO:0016567
Viun10g02329 281 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Viun10g02329 281 CDD BRcat_RBR_unk 181 233 - -
Viun10g02329 281 SUPERFAMILY RING/U-box 177 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02329 Viun-Chr10 37776874 37780142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02329 99 276 C3H Transcription Factor Family AT2G31770 26.630 6.61e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02329 K11975 - gmx:100816161 389.423