Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun10g02328 | ATGGAGGGAGCTTCAACTTCATCTGAAGGTCTTCACATGGTTGACGACTTCTACCATTCAGTACTTTACGGTGATGAAGAAATAATTTCAATTTCGGATGAGAAATATGCTGAAGATCTGCAACTACAAGAAGCCCTCTATTACTCCACAGTGTCAAGTGCTAGGGTTGAAAACAAAGTTGCAGATGATGATGAACCTTTGAAAAAACTCAAGAGGAAACAGAAAGAGAAGGGTGAAACTTCTAAAACTTCTTCCCGTGCATTCTGTGGTATTTGCATGGATGCAAAACCTGGAGAACAAATGTTCAGGAACCAAAACTGTTCCCACCTTTATTGTGATCATTGCATTCAAGGACATGTTGCTGCCAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAATATGCAAAGCTGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAACATGGTGCTTGCGTCACAAAAGTTTTATTGTCCCTTCAAGGATTGTTCTGCTATGATGATATGTGATGCAAGCGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATGCGGGATTAGACTGTAAGGAGTTTAAGAGGTCGAAAAGAGAGAAAAGAGAAAACGGAGACTCATTGGTGACGAACCTTGCGAAGAAGAAGGGTTGGAGAAGATGTTCAAAATGCAAAATTTACGTAGAAAGAATCCATGGATGTACTCGTATTTCATGCAGGTCGGTTTCGATGCACGGAAGAAGTGAAGTCATCAATCCATACAGCGAAACCGATGTGGCCATGAATTTTGCTATGCTTGTGGATCGTCTTGGACTGGGCACGGTGGTAGAGCGCTGCGGTGACAGCGACGATCGAGTGGTACAGGGCGGCGATGATAACGACGATCGATCGAGTGGTTGA | 984 | 0.4289 | MEGASTSSEGLHMVDDFYHSVLYGDEEIISISDEKYAEDLQLQEALYYSTVSSARVENKVADDDEPLKKLKRKQKEKGETSKTSSRAFCGICMDAKPGEQMFRNQNCSHLYCDHCIQGHVAAKIQENISMVKCPEPICKAVIEPENCRSIIPKEVFDRWENALCENMVLASQKFYCPFKDCSAMMICDASEVVTSSECPHCNRLFCAQCKVSWHAGLDCKEFKRSKREKRENGDSLVTNLAKKKGWRRCSKCKIYVERIHGCTRISCRSVSMHGRSEVINPYSETDVAMNFAMLVDRLGLGTVVERCGDSDDRVVQGGDDNDDRSSG | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun10g02328 | 327 | ProSiteProfiles | TRIAD supradomain profile. | 85 | 297 | IPR044066 | - | |
Viun10g02328 | 327 | FunFam | RBR-type E3 ubiquitin transferase | 84 | 170 | - | - | |
Viun10g02328 | 327 | CDD | BRcat_RBR_unk | 170 | 222 | - | - | |
Viun10g02328 | 327 | SUPERFAMILY | RING/U-box | 234 | 267 | - | - | |
Viun10g02328 | 327 | Pfam | IBR domain, a half RING-finger domain | 158 | 219 | IPR002867 | GO:0008270 | |
Viun10g02328 | 327 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 134 | IPR001841 | - | |
Viun10g02328 | 327 | Gene3D | - | 216 | 273 | - | - | |
Viun10g02328 | 327 | SUPERFAMILY | RING/U-box | 85 | 166 | - | - | |
Viun10g02328 | 327 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 64 | 267 | IPR031127 | GO:0004842|GO:0016567 | |
Viun10g02328 | 327 | SUPERFAMILY | RING/U-box | 165 | 225 | - | - | |
Viun10g02328 | 327 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 172 | IPR013083 | - | |
Viun10g02328 | 327 | SMART | ibrneu5 | 157 | 219 | IPR002867 | GO:0008270 | |
Viun10g02328 | 327 | ProSitePatterns | Zinc finger RING-type signature. | 107 | 116 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun10g02328 | Viun-Chr10 | 37773609 | 37777005 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun10g02328 | 89 | 268 | C3H Transcription Factor Family | AT2G19610 | 26.984 | 8.90e-18 | 81.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun10g02328 | K11975 | - | gmx:100816161 | 358.992 |