Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02328 ATGGAGGGAGCTTCAACTTCATCTGAAGGTCTTCACATGGTTGACGACTTCTACCATTCAGTACTTTACGGTGATGAAGAAATAATTTCAATTTCGGATGAGAAATATGCTGAAGATCTGCAACTACAAGAAGCCCTCTATTACTCCACAGTGTCAAGTGCTAGGGTTGAAAACAAAGTTGCAGATGATGATGAACCTTTGAAAAAACTCAAGAGGAAACAGAAAGAGAAGGGTGAAACTTCTAAAACTTCTTCCCGTGCATTCTGTGGTATTTGCATGGATGCAAAACCTGGAGAACAAATGTTCAGGAACCAAAACTGTTCCCACCTTTATTGTGATCATTGCATTCAAGGACATGTTGCTGCCAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAATATGCAAAGCTGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAACATGGTGCTTGCGTCACAAAAGTTTTATTGTCCCTTCAAGGATTGTTCTGCTATGATGATATGTGATGCAAGCGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATGCGGGATTAGACTGTAAGGAGTTTAAGAGGTCGAAAAGAGAGAAAAGAGAAAACGGAGACTCATTGGTGACGAACCTTGCGAAGAAGAAGGGTTGGAGAAGATGTTCAAAATGCAAAATTTACGTAGAAAGAATCCATGGATGTACTCGTATTTCATGCAGGTCGGTTTCGATGCACGGAAGAAGTGAAGTCATCAATCCATACAGCGAAACCGATGTGGCCATGAATTTTGCTATGCTTGTGGATCGTCTTGGACTGGGCACGGTGGTAGAGCGCTGCGGTGACAGCGACGATCGAGTGGTACAGGGCGGCGATGATAACGACGATCGATCGAGTGGTTGA 984 0.4289 MEGASTSSEGLHMVDDFYHSVLYGDEEIISISDEKYAEDLQLQEALYYSTVSSARVENKVADDDEPLKKLKRKQKEKGETSKTSSRAFCGICMDAKPGEQMFRNQNCSHLYCDHCIQGHVAAKIQENISMVKCPEPICKAVIEPENCRSIIPKEVFDRWENALCENMVLASQKFYCPFKDCSAMMICDASEVVTSSECPHCNRLFCAQCKVSWHAGLDCKEFKRSKREKRENGDSLVTNLAKKKGWRRCSKCKIYVERIHGCTRISCRSVSMHGRSEVINPYSETDVAMNFAMLVDRLGLGTVVERCGDSDDRVVQGGDDNDDRSSG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02328 327 ProSiteProfiles TRIAD supradomain profile. 85 297 IPR044066 -
Viun10g02328 327 FunFam RBR-type E3 ubiquitin transferase 84 170 - -
Viun10g02328 327 CDD BRcat_RBR_unk 170 222 - -
Viun10g02328 327 SUPERFAMILY RING/U-box 234 267 - -
Viun10g02328 327 Pfam IBR domain, a half RING-finger domain 158 219 IPR002867 GO:0008270
Viun10g02328 327 ProSiteProfiles Zinc finger RING-type profile. 89 134 IPR001841 -
Viun10g02328 327 Gene3D - 216 273 - -
Viun10g02328 327 SUPERFAMILY RING/U-box 85 166 - -
Viun10g02328 327 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 267 IPR031127 GO:0004842|GO:0016567
Viun10g02328 327 SUPERFAMILY RING/U-box 165 225 - -
Viun10g02328 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 172 IPR013083 -
Viun10g02328 327 SMART ibrneu5 157 219 IPR002867 GO:0008270
Viun10g02328 327 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02328 Viun-Chr10 37773609 37777005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02328 89 268 C3H Transcription Factor Family AT2G19610 26.984 8.90e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02328 K11975 - gmx:100816161 358.992