Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02327 ATGGAGGGAACTTCATCTTCATCAACGAACTTTCCCTCCACTGCTGAAGATCCTCATTCGGTGGTCGACGATTTCTACTTCTCAGCACTTCACGATGCTGAAGAAATGTTTCCGATTTCGGATGAGAAATATGCGGAAGAGTTACAGCTACAAGAAGCGCTCTATTCCTCCACAACGTTAAGTGCTAGGGTTGAAAAACAAGTTGTTATAGTGGATGTAGATTTAGATGATGATGACGATGACGATGACCTTCCTTTGAGAACCCTCAAGGGGAAACAGAAGGAGATCGGTGAATGTTCTTCTTCTTCCCATGGCTACTGTGGTATTTGCATGGATGCAAAACCTGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACATTTTTTGCGAAGATTGCATTGGAAGACATGTTGCTGCGAAGATTCAGGAAAATATATCAATGGTGAAATGTCCCGAACCAAAATGCAAAGCTGTTATAGAGCCTGAGTTCTGTCGTTCGATTATCCCTGAAGAAGTGTTTGATAGATGGGAAAATGCTCTCTGCGAGAATGTGGTGCTTGAATCGCAGAAGTTTTATTGTCCTTTCAAGGATTGTTCTGCTATGATGATATGTGATGATGAAGAAGAAGTGGTAACTATTTCTGAGTGTCCACATTGTAATAGATTGTTCTGTGCACGGTGCAAGGTTTCATGGCATGCGGGATTAGATTGTAGAGAGTTTAACGCATTGAATGATGATGAGAGAGGGAGGGAAGATCTGCAGGTGCTGGATCTTGCGAAGAACAAGAGTTGGAGGAGATGTCCAAAATGCAGATTCTATGTGGAAAAAAATGAAGGATGTTCGCATATTTCTTGCAGATGTGGGAAGGAATTTTGTTATGCATGTGGATCCTCTTGGTCACAGAACCATGCATGTTAA 921 0.4191 MEGTSSSSTNFPSTAEDPHSVVDDFYFSALHDAEEMFPISDEKYAEELQLQEALYSSTTLSARVEKQVVIVDVDLDDDDDDDDLPLRTLKGKQKEIGECSSSSHGYCGICMDAKPGEEMFRNQNCSHIFCEDCIGRHVAAKIQENISMVKCPEPKCKAVIEPEFCRSIIPEEVFDRWENALCENVVLESQKFYCPFKDCSAMMICDDEEEVVTISECPHCNRLFCARCKVSWHAGLDCREFNALNDDERGREDLQVLDLAKNKSWRRCPKCRFYVEKNEGCSHISCRCGKEFCYACGSSWSQNHAC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02327 306 CDD BRcat_RBR_unk 188 241 - -
Viun10g02327 306 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Viun10g02327 306 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 302 IPR031127 GO:0004842|GO:0016567
Viun10g02327 306 SMART ibrneu5 248 306 IPR002867 GO:0008270
Viun10g02327 306 SMART ibrneu5 175 238 IPR002867 GO:0008270
Viun10g02327 306 ProSiteProfiles Zinc finger RING-type profile. 107 155 IPR001841 -
Viun10g02327 306 CDD Rcat_RBR_unk 265 300 - -
Viun10g02327 306 Gene3D - 192 239 - -
Viun10g02327 306 FunFam RBR-type E3 ubiquitin transferase 102 188 - -
Viun10g02327 306 SUPERFAMILY RING/U-box 103 184 - -
Viun10g02327 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 189 IPR013083 -
Viun10g02327 306 SUPERFAMILY RING/U-box 249 305 - -
Viun10g02327 306 ProSiteProfiles TRIAD supradomain profile. 103 306 IPR044066 -
Viun10g02327 306 Gene3D - 240 306 - -
Viun10g02327 306 Pfam IBR domain, a half RING-finger domain 176 238 IPR002867 GO:0008270
Viun10g02327 306 Pfam IBR domain, a half RING-finger domain 259 306 IPR002867 GO:0008270
Viun10g02327 306 SUPERFAMILY RING/U-box 183 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02327 Viun-Chr10 37767669 37768718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02327 107 305 C3H Transcription Factor Family AT2G31770 27.273 1.42e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02327 K11975 - gmx:100815626 428.328