Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02326 ATGGCTCCTCCTTCTGCAGCAAACGATGGAACAACTTCAAATTCAGGAAGAAGGAGAGAGATTGAGATCAAAGAAGTTGAACAGAGAAACAGAAGATGCGTCACCTTTTCCAAACGCAAATTAGGGCTTTTCAACAAACTCACTGAACTTTCTCTTCTATGCAGAGTAGAAACTGCTTATATCATCACCTCTCAAAACGGCAACGTCTATTCCTGTGGCTACCCCACCACCGCCGCCGTCCTCCACCGCTACGTCACCGGAAGAGTGTACCAACAATGCAGAGTTACAAGCGAGCACGAGCATGAAGAGTTTCTTGAAAAGCAAAGGCTGGAATATGAGAATGTGCAGAATAAGTTGAAAGAAAAACAGAAGCAGTTGAAAGAATTGAAGGAAGCACAAAACATTAGTTCTTGTTTTGGTTGTAGGTGGAATCTCTCACATGAGAACATGGGTTTGGAGGATCTTGAAGAGTTCAAGTGCTCCTTGGAAAGTTTGAAGCTTAATCTAATCACAGTATTGCAAGAGAAAGAAGCTTCATTGAGATCCGATTCTTTGTATAAATTGTAG 567 0.4198 MAPPSAANDGTTSNSGRRREIEIKEVEQRNRRCVTFSKRKLGLFNKLTELSLLCRVETAYIITSQNGNVYSCGYPTTAAVLHRYVTGRVYQQCRVTSEHEHEEFLEKQRLEYENVQNKLKEKQKQLKELKEAQNISSCFGCRWNLSHENMGLEDLEEFKCSLESLKLNLITVLQEKEASLRSDSLYKL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02326 188 Gene3D - 29 100 IPR036879 GO:0003677|GO:0046983
Viun10g02326 188 PANTHER MADS BOX PROTEIN 18 169 - -
Viun10g02326 188 MobiDBLite consensus disorder prediction 1 21 - -
Viun10g02326 188 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 Coils Coil 102 135 - -
Viun10g02326 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Viun10g02326 188 SUPERFAMILY SRF-like 18 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02326 Viun-Chr10 37751991 37753439 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02326 18 169 Type I MADS-box Gene Family AT3G04100 29.936 5.02e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun10g02326 SRF-TF 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02326 - - gsj:114418701 183.341