Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02324 ATGTTTCCGTTCCATCCTCAAGGAGCTCCGAAGCACTCTTGCACTCTTCTCGCTGTAACCTGTGGGACCAGTTTTGGGGAGCACAAGTCCTCACAGAATCAACACGAATATCCTTTCCCTGAGCTCGTTTCCGCAGGGCGTCTTGAGGTTCAAACTCTTCGGAATCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCGTATCAACCGAATTTTGTTTATTTGCAAGGAGAGCAGCTAGAGAATGGCAGAGTTGGTTCACTGGTTTGGCAAGGATTGGAATTATCGACTTCTGAAGATATCACAGAGCTCTTTGGTTCCACATTGCCGACTGCTGTTTATTTAGAAATACCAAATGGTGAAAGTTTTGCAGAATCTCTTCATCTTAAGGGAGTCCCATATGTTATATTTTGGAAGAATACCATTTCTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCGTCTACACATACGTGGGATGCTTTTCATCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAACCAATTACTTTCTACTGATAGTCATGGTGCTCTTAGTGAGATGGGGCCACACCTTCTTGGTGAATGTCTCAAAATCAATGTTGACCCTTCAGAGATTGATGAGGAAGATGATGACGAAAATTCCTCAGGCACTCTGCCTGCAATTAAGATACATGAAGATGAAGTGAACTTGAGGTTCCTTATCTGTGGTGCACCTTCGACTGTTGACGAGACATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATCCGAGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCGACTTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACAACTCAACAATGAGGGAAACAAACAGAATATTTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCACCTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTCGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAAATGACGCTGAGCGATTACTTTTCTTTTATCAAAGTTGTGAGAAAGATAGTGGTACAAGCAAAGATAATATAATATTTAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAGGTGTGAACCAAGCCAAGGGGCTAGCCTTGGTCTTCATGACGGTGTCTTTGCAGGGCATGGTGCTGTTTGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGCGAATGGCATTAGCACCCCATTAACTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATCCCTCACATTCGCCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGGCAGATGGTTTTGATGGTGGCCAAGTTGAGGCTAATTTGCCACTTATTGCCCCAGCAAAGCGGAGTACTGGATCAGCATCTGCAACACACAGAAAATCATTTTCAAGTGCAGCTCAATCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGCCCAGTACAGACGTGCTCTGAGGAGGAATTTCTTAAAGACGTCATGGAGTTTCTAATTCTCCGGGGACATAATCGCCTAATTCCTCAAGGAGGGCTTGCTGAGTTCCCTGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACGAGAGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTACACAGCTACCAATAGGATGACTGGTGTTGGAAATACCCTGAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTGGCACATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTAGGTAATGGGTATTCTCAAGGCTCAATGCCTTCACGACTCCTTTGA 2346 0.4339 MFPFHPQGAPKHSCTLLAVTCGTSFGEHKSSQNQHEYPFPELVSAGRLEVQTLRNPDKEQFRKVLESYQPNFVYLQGEQLENGRVGSLVWQGLELSTSEDITELFGSTLPTAVYLEIPNGESFAESLHLKGVPYVIFWKNTISSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQLLSTDSHGALSEMGPHLLGECLKINVDPSEIDEEDDDENSSGTLPAIKIHEDEVNLRFLICGAPSTVDETLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKNDAERLLFFYQSCEKDSGTSKDNIIFSSPPGWLKPPPPRRKRCEPSQGASLGLHDGVFAGHGAVCKVNEEEKDRKMANGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSEADGFDGGQVEANLPLIAPAKRSTGSASATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTATNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVGNGYSQGSMPSRLL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02324 781 CDD PHD_ARID4_like 705 756 - -
Viun10g02324 781 CDD ARID 597 695 - -
Viun10g02324 781 MobiDBLite consensus disorder prediction 553 573 - -
Viun10g02324 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Viun10g02324 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Viun10g02324 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
Viun10g02324 781 MobiDBLite consensus disorder prediction 554 573 - -
Viun10g02324 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Viun10g02324 781 SMART ARID_2 592 695 - -
Viun10g02324 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Viun10g02324 781 Gene3D - 593 698 IPR036431 GO:0003677
Viun10g02324 781 MobiDBLite consensus disorder prediction 442 463 - -
Viun10g02324 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 776 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02324 Viun-Chr10 37732391 37740494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02324 4 770 ARID Transcription Factor Family AT3G43240 59.561 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun10g02324 ARID 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02324 - - gmx:100816540 1422.91