Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02315 ATGACTAACCCAAAACTTCCCTACGCCGGAATCTCAGATTCCGGCCACCACAGTTCTCTCTCCAAAAAATCCTTCTACAAGAAGAAGCTTTTCCTAACTCTTTTCGCCACCCTCCTGGTGGCAGCCTCCGTAGCGGCCATAGTCGCCGGAGTGAAAAACAAAAAGCAAAAATCCGACAGCAGCAGCAGCAGCACCCCTCTGTCCCTCTCCCACCAGTCCCACGCGATTCTCAAGAGCGCGTGTAGTTCTACATTCTACTCAGAACTCTGCTTCTCTGCTGTGGCTTCAGAACCCAACGTCACTCACAAAATAACCTCTCACCGTGACGTCATTCAACTCTCCCTCAACATCACCACGCGCGCGGTGGAGCACAACTACTTCACCGTGAAGAAGCTCACCACCAAGCACGGCCTCACCGAGCGCGAGAAAACCGCGCTCCACGACTGTCTCGAAACCATCGACGAGACCCTCGACGAGCTGAGAGAGGCTCAGCGCGATCTCGAGCTCTACCCCAACAAGAAAACACTGTACCAGCACGCCGACGATCTCAAAACCTTAATCAGCGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGACGCCGATAAGCGCATCCGCAAGGCTCTGGAGAAAGGCCAGGTGCACGTGGAACACATGTGCAGCAACGCGCTGGCCATGACCAAGAACATGACCGACACCGACATTGCCAACTTCGAACAGAACATGAAGCTCCGAGACAACAAGGTTGGCCAAAATAGAAAGCTCTTGGCGGAGGAGAGCAATGCCGGTGCTGATGGTGGTGTTGTCTGGCCGGAGTGGATTTCTGCCGCCGACAGGAGGCTGCTTCAGGCAACGGCAGTGAAGGCTGATGTGGTGGTGGCCGCTGACGGCAGTGGAGACTTTAAGACGGTGTCGGAGGCCGTGGACGCTGCTCCGTTGAAGAGTAGTAAGAGATTTGTTATAAGGATAAAGGCTGGGGTTTACAAAGAAAATGTGGAAGTTCCAAAGAAGAAGACCAACATCATGTTCTTGGGTGATGGAAGAACCACCACCATCATCACCGCCAGCAGAAACGTCGTCGATGGTAGCACCACCTTCCACTCCGCCACCGTCGCTGTGGTGGGTGAAAATTTTCTCGCCAGGGACATAACATTCCAAAACACAGCAGGGCCCTCAAAGCACCAAGCAGTGGCTCTAAGAGTAGGAGGGGACCTCTCAGCATTTTACAACTGTGACATCTTAGCATACCAAGACACTCTTTACGTCCACAACAACCGTCAATTCTTTGTGAAGTGTCTGGTTGCAGGGACGGTGGATTTCATCTTCGGTAACTCTGCAGTGGTGTTCCAAGACTGTGACATCCACGCCAGGCGTCCTGATTCGGGCCAGAAGAACATGGTGACGGCCCAGGGAAGGGTAGACCCTAACCAGAACACTGGCATTGTGATCCAGAAGTGTAGGATCGGTGCAACTTCGGATTTGGAGTCTGTGAAGAAGAGTTTCAAGACCTATCTTGGGAGACCCTGGAAGGAGTACTCAAGAACTGTGTTCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAGTGGTAACTTTGCATTGAGCACTTTGGTCTACAGGGAATATCAGAACACCGGGCCTGGTGCTGGAACCTCTAATAGGGTGTCTTGGAAAGGGTTCAAAGTTATCACTGATGCTGCCGAAGCCCGGGCTTTTACCCCTGGAAGCTTCATTGGAGGCTCTAGCTGGTTGGACTCCACGGGCTTTCCTTTCTCTCTTGGCTTGTAA 1821 0.5283 MTNPKLPYAGISDSGHHSSLSKKSFYKKKLFLTLFATLLVAASVAAIVAGVKNKKQKSDSSSSSTPLSLSHQSHAILKSACSSTFYSELCFSAVASEPNVTHKITSHRDVIQLSLNITTRAVEHNYFTVKKLTTKHGLTEREKTALHDCLETIDETLDELREAQRDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRIRKALEKGQVHVEHMCSNALAMTKNMTDTDIANFEQNMKLRDNKVGQNRKLLAEESNAGADGGVVWPEWISAADRRLLQATAVKADVVVAADGSGDFKTVSEAVDAAPLKSSKRFVIRIKAGVYKENVEVPKKKTNIMFLGDGRTTTIITASRNVVDGSTTFHSATVAVVGENFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVKCLVAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLESVKKSFKTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWSGNFALSTLVYREYQNTGPGAGTSNRVSWKGFKVITDAAEARAFTPGSFIGGSSWLDSTGFPFSLGL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02315 606 CDD PMEI-like_3 79 236 - -
Viun10g02315 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 236 IPR035513 -
Viun10g02315 606 SMART PMEI_2 72 231 IPR006501 GO:0004857
Viun10g02315 606 ProSitePatterns Pectinesterase signature 2. 439 448 IPR033131 -
Viun10g02315 606 FunFam Pectinesterase 289 606 - -
Viun10g02315 606 Gene3D - 289 606 IPR012334 -
Viun10g02315 606 FunFam Pectinesterase 73 236 - -
Viun10g02315 606 ProSitePatterns Pectinesterase signature 1. 320 339 IPR018040 -
Viun10g02315 606 Pfam Plant invertase/pectin methylesterase inhibitor 77 231 IPR006501 GO:0004857
Viun10g02315 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 236 IPR035513 -
Viun10g02315 606 Coils Coil 146 166 - -
Viun10g02315 606 SUPERFAMILY Pectin lyase-like 290 605 IPR011050 -
Viun10g02315 606 Pfam Pectinesterase 295 591 IPR000070 GO:0030599|GO:0042545
Viun10g02315 606 PANTHER PECTINESTERASE 43 596 - -
Viun10g02315 606 NCBIfam pectinesterase inhibitor domain 67 235 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02315 Viun-Chr10 37649103 37654058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02315 20 606 Carbohydrate Esterase AT3G14310 71.119 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02315 K01051 - pvu:PHAVU_010G123100g 1036.56